{"id":"W4392185177","doi":"10.1093/plphys/kiae078","title":"High-quality genome assembly enables prediction of allele-specific gene expression in hybrid poplar","year":2024,"lang":"en","type":"article","venue":"PLANT PHYSIOLOGY","topic":"Bioenergy crop production and management","field":"Agricultural and Biological Sciences","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; University of British Columbia","funders":"National Key Research and Development Program of China; Chinese Academy of Forestry; National Natural Science Foundation of China","keywords":"Allele; Gene; Genome; Biology; Genetics; Gene expression; Computational biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005332814,0.0005229304,0.0003434738,0.0003564699,0.0001772815,0.0004256516,0.0002307163,0.0002662031,0.0003326287],"category_scores_gemma":[0.0007813363,0.0002325495,0.0005296695,0.0003333369,0.0001237091,0.0002782216,0.000279043,0.0005304294,0.0002452645],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002755556,"about_ca_system_score_gemma":0.0002125608,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0019675,"about_ca_topic_score_gemma":0.002611243,"domain_scores_codex":[0.9997981,0.00003803246,0.00001107547,0.00009535153,0.00003697246,0.00002046371],"domain_scores_gemma":[0.9997278,0.0001396217,0.00004925768,0.00002507658,0.0000423743,0.00001581533],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003977375,0.00008844264,0.03011146,0.0001368599,0.0001198724,0.0001670974,0.0001368508,0.07413123,0.8467119,0.0005554804,0.000417786,0.04702526],"study_design_scores_gemma":[0.00001664623,0.000189044,0.08864097,0.0000147262,0.00009613177,0.000112822,0.00008071086,0.7076345,0.2000079,0.001094157,0.002067228,0.00004521527],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8800318,0.0003813554,0.1158222,0.00006737958,0.00001329448,0.00002276501,0.002028485,0.001180209,0.000452547],"genre_scores_gemma":[0.9361742,0.0001895038,0.05846527,0.00003738143,0.000006187417,0.00004497419,0.004587391,0.0001530167,0.0003420441],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0019675,"threshold_uncertainty_score":0.003912091,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03026228218509159,"score_gpt":0.2186029256686725,"score_spread":0.1883406434835809,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}