{"id":"W4392201282","doi":"10.1101/2024.02.22.581693","title":"Avian influenza virus circulation and immunity in a wild urban duck population prior to and during a highly pathogenic H5N1 outbreak","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; University of Saskatchewan; Environment and Climate Change Canada; Canadian Food Inspection Agency; Memorial University of Newfoundland","funders":"","keywords":"Influenza A virus subtype H5N1; Seroprevalence; Outbreak; Population; Virology; Biology; Antibody; Virus; Immunity; Immune system; Influenza A virus; Serology; Immunology; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002724586,0.0002387021,0.0002217143,0.0004816644,0.0006795543,0.0006032311,0.0002360145,0.0003595095,0.000596014],"category_scores_gemma":[0.0005165703,0.0002193695,0.0001748877,0.0003092035,0.0004207362,0.0004172472,0.0002219215,0.000413443,0.0001763694],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001194407,"about_ca_system_score_gemma":0.0003979609,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04430733,"about_ca_topic_score_gemma":0.09567001,"domain_scores_codex":[0.9998319,0.00002398484,0.00001199068,0.00004838025,0.00002764345,0.00005605511],"domain_scores_gemma":[0.9995491,0.00004390097,0.0001071844,0.00002124174,0.000126424,0.0001520718],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001605427,0.0001502325,0.9949785,0.000006972951,0.00001818149,0.0002364472,0.0005411135,0.00005360042,0.002822087,0.00001041155,0.0001002164,0.0009216387],"study_design_scores_gemma":[0.000001159552,0.0001198871,0.999015,0.000001796786,0.000003155155,0.00007995076,0.0005216172,0.00005363111,0.0001159823,0.000002541935,0.00008320948,0.000002078681],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997218,0.00001570324,0.0000138385,0.000008893476,0.000002181101,0.000003024586,0.00006417872,8.890113e-7,0.0001695101],"genre_scores_gemma":[0.9995813,0.00001942607,0.000027391,0.000014217,0.000003864864,0.00000343222,0.0001688645,5.70737e-7,0.0001809861],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04430733,"threshold_uncertainty_score":0.08809882,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02746917845545681,"score_gpt":0.2901204242498801,"score_spread":0.2626512457944233,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}