{"id":"W4392283315","doi":"10.1155/2024/2327939","title":"Descriptive Epidemiology and Phylodynamics of the “First Wave” of an Outbreak of Highly Pathogenic Avian Influenza (H5N1 Clade 2.3.4.4b) in British Columbia and the Yukon, Canada, April to September 2022","year":2024,"lang":"en","type":"article","venue":"Transboundary and Emerging Diseases","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Yukon Department of Environment; Environment and Climate Change Canada; Canadian Food Inspection Agency; Public Health Agency of Canada; Ministry of Agriculture; Government of British Columbia; BC Centre for Disease Control; University of British Columbia","funders":"","keywords":"Influenza A virus subtype H5N1; Clade; Viral phylodynamics; Outbreak; Highly pathogenic; Epidemiology; Virology; Geography; Biology; Phylogenetics; Virus; Genetics; Medicine; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004818373,0.0001499695,0.0006432508,0.00007271722,0.000232872,0.00003221162,0.0001088687,0.00005970781,0.00002630626],"category_scores_gemma":[0.0003190676,0.000128836,0.00009645832,0.0003204174,0.001484501,0.0001042153,0.0001011217,0.0002390789,1.085811e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000636923,"about_ca_system_score_gemma":0.0004693336,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.4701104,"about_ca_topic_score_gemma":0.8668799,"domain_scores_codex":[0.9982468,0.0002746958,0.0005595213,0.0003294463,0.0002646132,0.0003249184],"domain_scores_gemma":[0.9989118,0.0004917983,0.00007677011,0.0002461674,0.0001037653,0.0001697114],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001768591,0.0002237261,0.9567579,0.004328838,0.0007396637,0.0001319225,0.008831222,0.0001647283,0.001357897,0.0004049969,0.001440738,0.02384979],"study_design_scores_gemma":[0.001519588,0.0001957377,0.9900626,0.0007844593,0.0003184243,0.00003188524,0.001359243,0.001196109,0.00003939336,0.0007101975,0.00364578,0.0001365895],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9702856,0.02703865,0.000007475273,0.0009339914,0.00007993283,0.0005984801,0.0009662897,0.00001137377,0.00007823068],"genre_scores_gemma":[0.9978834,0.001138438,0.00004371644,0.0007517688,0.00003063348,0.00004266217,0.00001032481,0.00002008646,0.00007894754],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3967694,"threshold_uncertainty_score":0.5469707,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02480605621131824,"score_gpt":0.2909692389441232,"score_spread":0.2661631827328049,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}