{"id":"W4392285194","doi":"10.3390/plants13050691","title":"Development and Assessment of SNP Genotyping Arrays for Citrus and Its Close Relatives","year":2024,"lang":"en","type":"article","venue":"Plants","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Office of Science; National Institute of Food and Agriculture; U.S. Department of Agriculture; U.S. Department of Energy","keywords":"Genotyping; Biology; Genome; Single-nucleotide polymorphism; SNP genotyping; SNP; Genetics; Molecular Inversion Probe; Concordance; SNP array; Computational biology; Genotype; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00331606,0.0005101055,0.0005982278,0.0007773257,0.000575859,0.000650313,0.0007030868,0.0007906823,0.002274666],"category_scores_gemma":[0.003561304,0.0005391529,0.0004989321,0.0006514604,0.0003082793,0.0003575646,0.0005959422,0.0008714674,0.00134214],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000420117,"about_ca_system_score_gemma":0.000456,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009467838,"about_ca_topic_score_gemma":0.002579476,"domain_scores_codex":[0.9954767,0.001276395,0.0003501226,0.001463962,0.001196888,0.0002360398],"domain_scores_gemma":[0.9975613,0.0008287102,0.0002820638,0.0004921011,0.0006851487,0.0001507014],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002238271,0.00006784183,0.008371659,0.0001409992,0.0000781149,0.00005314328,0.0001065131,0.00162884,0.9582419,0.0004951751,0.0005480459,0.03004393],"study_design_scores_gemma":[0.0001094224,0.001808688,0.1057597,0.00007792214,0.0003252979,0.0008827815,0.000136162,0.01790519,0.8414064,0.001015685,0.03045976,0.0001129456],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5475665,0.001973372,0.4271229,0.0004692067,0.0001843532,0.002223081,0.01016615,0.002284081,0.008010512],"genre_scores_gemma":[0.3009444,0.0005077364,0.6764109,0.0004443451,0.00005073905,0.002329835,0.01303214,0.0002769902,0.006003072],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00331606,"threshold_uncertainty_score":0.01753724,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0688886986888269,"score_gpt":0.2843931401442982,"score_spread":0.2155044414554713,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}