{"id":"W4392343332","doi":"10.1101/2024.02.27.582413","title":"Geny: A Genotyping Tool for Allelic Decomposition of Killer Cell Immunoglobulin-Like Receptor Genes","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"National Cancer Institute; British Columbia Knowledge Development Fund; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Genotyping; Allele; Gene; Biology; Antibody; Genetics; Computational biology; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002537525,0.001141307,0.001280826,0.001423409,0.0004849686,0.0009665305,0.001174143,0.0007783993,0.008537377],"category_scores_gemma":[0.005543095,0.000715722,0.001075991,0.001100394,0.0004240436,0.0008091966,0.001654716,0.0007927982,0.002079686],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004282333,"about_ca_system_score_gemma":0.001130043,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00173709,"about_ca_topic_score_gemma":0.002827587,"domain_scores_codex":[0.9990095,0.0003385133,0.00006436189,0.0002773468,0.0002452637,0.00006515884],"domain_scores_gemma":[0.9983039,0.001078784,0.0002074994,0.000226614,0.0001259584,0.00005727846],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003226063,0.0003071493,0.03302421,0.001359145,0.00115256,0.001280661,0.0008503908,0.1837599,0.0673358,0.01960562,0.1310451,0.5570534],"study_design_scores_gemma":[0.0005531658,0.0002277748,0.008764758,0.00007469198,0.0001287066,0.0007467606,0.0001140995,0.8878475,0.0335679,0.0235261,0.04429423,0.0001543178],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.02846565,0.0002613378,0.8800102,0.0001697063,0.0001101605,0.0001095013,0.01149799,0.07799844,0.001376995],"genre_scores_gemma":[0.1433104,0.0002516728,0.8298475,0.0003467141,0.00006128085,0.000664147,0.01476692,0.008262575,0.002488749],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.008537377,"threshold_uncertainty_score":0.0285604,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01076395088948608,"score_gpt":0.2272884504994263,"score_spread":0.2165244996099402,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}