{"id":"W4392353098","doi":"10.1101/2024.02.26.582167","title":"Genome assembly variation and its implications for gene discovery in nematode species","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; University of Calgary","keywords":"Biology; Nematode; Genome; Gene; Variation (astronomy); Structural variation; Genetics; Evolutionary biology; Genetic variation; Computational biology; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002651581,0.0002848231,0.0003383451,0.00007077708,0.0001662555,0.0004965767,0.0002345506,0.000176267,0.00001155818],"category_scores_gemma":[0.00005247015,0.0001555708,0.00008457883,0.0003968893,0.0000260275,0.0001763757,0.0006105039,0.0001784509,0.00001462132],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007133434,"about_ca_system_score_gemma":0.00002689386,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001489179,"about_ca_topic_score_gemma":0.00001831324,"domain_scores_codex":[0.9985364,0.0000368092,0.0003668762,0.000657465,0.0001230779,0.0002793836],"domain_scores_gemma":[0.9993714,0.00008758691,0.0001892588,0.0001359381,0.0001527151,0.0000630962],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000007615953,0.00004300016,0.002489167,0.0002237582,0.00005363945,0.000001770392,0.00001320218,0.000006351644,0.9902374,0.006882301,0.00003978967,0.000002043137],"study_design_scores_gemma":[0.0001024184,0.0000215177,0.9802228,0.0001014491,0.00006471343,6.108818e-9,0.000006392422,0.0001201675,0.01687679,0.00007604568,0.002054536,0.0003532016],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936186,0.001360536,0.0001929548,0.002615444,0.0003154753,0.0009219667,0.0008045164,0.0001583309,0.00001215545],"genre_scores_gemma":[0.9977925,0.0009018661,0.0001600106,0.0001161463,0.0004395996,0.0005217178,0.00000620225,0.000007507424,0.00005443941],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9777336,"threshold_uncertainty_score":0.6343994,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02712489948373004,"score_gpt":0.2245710123710934,"score_spread":0.1974461128873634,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}