{"id":"W4392353098","doi":"10.1101/2024.02.26.582167","title":"Genome assembly variation and its implications for gene discovery in nematode species","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; University of Calgary","keywords":"Biology; Nematode; Genome; Gene; Variation (astronomy); Structural variation; Genetics; Evolutionary biology; Genetic variation; Computational biology; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006552049,0.000351671,0.0004765356,0.001377873,0.0006797457,0.001275252,0.0005724055,0.0005227061,0.0006593855],"category_scores_gemma":[0.01541764,0.0002753353,0.0004298138,0.001142294,0.0008173723,0.0008900719,0.0009776172,0.0008815537,0.0001773806],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007112765,"about_ca_system_score_gemma":0.0003530236,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001479262,"about_ca_topic_score_gemma":0.003290625,"domain_scores_codex":[0.9956189,0.001982553,0.0003650626,0.001057872,0.0007881267,0.0001875009],"domain_scores_gemma":[0.9878839,0.007875604,0.001758208,0.001286476,0.001008732,0.0001870103],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007904753,0.0001126968,0.2553837,0.0008431113,0.0009281763,0.0007522137,0.001518459,0.016505,0.6554075,0.003394906,0.001507836,0.06285598],"study_design_scores_gemma":[0.00002993374,0.0004458045,0.7467449,0.0003494128,0.0006635763,0.001784584,0.00123648,0.05809144,0.1646667,0.01163781,0.01415125,0.0001980222],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9632654,0.002576511,0.03041198,0.0004892503,0.00004351916,0.00002662496,0.001362538,0.0004059296,0.001418237],"genre_scores_gemma":[0.9760627,0.0003792502,0.02171085,0.0002086908,0.00001613105,0.00002843935,0.001179007,0.0002256383,0.000189171],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006552049,"threshold_uncertainty_score":0.03465098,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02712489948373004,"score_gpt":0.2245710123710934,"score_spread":0.1974461128873634,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}