{"id":"W4392365153","doi":"10.1016/j.isci.2024.109402","title":"Cultivation and sequencing-free protocol for Serratia marcescens detection and typing","year":2024,"lang":"en","type":"article","venue":"iScience","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Blood Services; University of Ottawa","funders":"Fondazione Romeo ed Enrica Invernizzi; Università degli Studi di Milano","keywords":"Serratia marcescens; Outbreak; Typing; Enterobacteriaceae Infections; Intensive care; Pathogen; Microbiology; Biology; Protocol (science); Serratia; Computational biology; Medicine; Genetics; Intensive care medicine; Virology; Enterobacteriaceae; Bacteria; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001727815,0.001692528,0.001284253,0.002159042,0.001005682,0.0005346651,0.001153457,0.001088523,0.006522082],"category_scores_gemma":[0.003130879,0.001051895,0.001029708,0.001438174,0.0006006414,0.0005524068,0.001048689,0.001862325,0.01207053],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002457689,"about_ca_system_score_gemma":0.001238681,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005970197,"about_ca_topic_score_gemma":0.001334059,"domain_scores_codex":[0.9963263,0.0009403605,0.0006224354,0.0007722849,0.0009695698,0.000369066],"domain_scores_gemma":[0.9979873,0.0003281255,0.0002071434,0.0006490372,0.0006716165,0.0001568658],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002080531,0.0001632713,0.0008278899,0.000322274,0.00002229619,0.0003219428,0.0001898506,0.0003020487,0.9780154,0.0005817788,0.002870971,0.01617425],"study_design_scores_gemma":[0.0001261103,0.001303781,0.008993868,0.000242727,0.0001802813,0.001593446,0.0001846432,0.006378133,0.8511408,0.001172249,0.1285055,0.0001783753],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.0768032,0.00160337,0.8858853,0.0004193472,0.0008404691,0.01173072,0.00795321,0.004917254,0.009847262],"genre_scores_gemma":[0.09223969,0.002600332,0.8130167,0.0007326596,0.0002814438,0.02956961,0.04289767,0.001225201,0.01743672],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.006522082,"threshold_uncertainty_score":0.02181858,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03829558466245885,"score_gpt":0.3213551681347133,"score_spread":0.2830595834722544,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}