{"id":"W4392458333","doi":"10.1128/msphere.00741-23","title":"Phylogenomic and phenotypic analyses highlight the diversity of antibiotic resistance and virulence in both human and non-human <i>Acinetobacter baumannii</i>","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Manitoba","funders":"Agriculture and Agri-Food Canada; Ottawa Hospital Research Institute","keywords":"Acinetobacter baumannii; Virulence; Biology; Human pathogen; Microbiology; Antibiotic resistance; Antibiotics; Pathogen; Galleria mellonella; Multiple drug resistance; Drug resistance; Mobile genetic elements; Virology; Plasmid; Gene; Bacteria; Genetics; Pseudomonas aeruginosa","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002318948,0.0002725509,0.0003020401,0.001219789,0.0002830752,0.0006335945,0.0001456004,0.0002886981,0.001060414],"category_scores_gemma":[0.0004373113,0.00009710262,0.0003891108,0.001173862,0.0001919725,0.0002178232,0.000470222,0.0003114289,0.00041366],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001605336,"about_ca_system_score_gemma":0.0001605158,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00162473,"about_ca_topic_score_gemma":0.001604002,"domain_scores_codex":[0.9996554,0.00005884083,0.00003126253,0.0001019543,0.00006193831,0.00009061836],"domain_scores_gemma":[0.9997075,0.00005713892,0.00009537645,0.00002925724,0.00005496348,0.00005577821],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008223222,0.0002175646,0.2655986,0.0002023073,0.0001717575,0.0005983426,0.0006957377,0.0007974139,0.7067292,0.0002016566,0.0008853402,0.02307969],"study_design_scores_gemma":[0.000008058103,0.0002904205,0.9677055,0.00003006289,0.0000858444,0.001692396,0.000997265,0.002828083,0.02226126,0.0001938581,0.003882239,0.00002501767],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953387,0.0004173386,0.0008835404,0.0001021577,0.000005764597,0.00001577385,0.002715025,0.00002428894,0.0004973874],"genre_scores_gemma":[0.9903607,0.0002757466,0.00213472,0.00007151472,0.00001081752,0.00002411799,0.006653248,0.0000187947,0.0004502257],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00162473,"threshold_uncertainty_score":0.00354749,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01465390331742722,"score_gpt":0.280115345889763,"score_spread":0.2654614425723358,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}