{"id":"W4392458333","doi":"10.1128/msphere.00741-23","title":"Phylogenomic and phenotypic analyses highlight the diversity of antibiotic resistance and virulence in both human and non-human <i>Acinetobacter baumannii</i>","year":2024,"lang":"en","type":"article","venue":"mSphere","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Manitoba","funders":"Agriculture and Agri-Food Canada; Ottawa Hospital Research Institute","keywords":"Acinetobacter baumannii; Virulence; Biology; Human pathogen; Microbiology; Antibiotic resistance; Antibiotics; Pathogen; Galleria mellonella; Multiple drug resistance; Drug resistance; Mobile genetic elements; Virology; Plasmid; Gene; Bacteria; Genetics; Pseudomonas aeruginosa","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001470811,0.000164148,0.0002051469,0.00002921485,0.0001745972,0.00005925005,0.000154414,0.00009959704,0.00001370986],"category_scores_gemma":[0.000009274207,0.0001251089,0.00003319536,0.00008985137,0.0003803387,0.00001160936,0.0003092831,0.00009449026,0.000001008004],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001199696,"about_ca_system_score_gemma":0.00001612329,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000127524,"about_ca_topic_score_gemma":0.001236717,"domain_scores_codex":[0.9990827,0.00005293967,0.0001972098,0.0004124092,0.00007875392,0.0001760005],"domain_scores_gemma":[0.9995742,0.00002134078,0.00006383494,0.0002785576,0.00001979147,0.0000423032],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003797589,0.0000174407,0.2032896,0.0002340054,0.00005387219,0.00001037293,0.0001831282,0.00000130184,0.7952195,0.0002461539,0.0005308872,0.0001757666],"study_design_scores_gemma":[0.0003544388,0.00009916862,0.9564495,0.000211413,0.00006280418,0.000005422223,0.0001836277,0.00001513145,0.040627,0.0002564066,0.001533664,0.0002014363],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9906175,0.008173274,0.00003208423,0.00008341591,0.00004383161,0.0001401917,0.00002373933,0.000007354695,0.0008786715],"genre_scores_gemma":[0.9982249,0.000720358,0.0001316227,0.00005551137,0.00005765547,7.901697e-7,0.00001297593,0.00001533076,0.00078092],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7545925,"threshold_uncertainty_score":0.5101792,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01465390331742722,"score_gpt":0.280115345889763,"score_spread":0.2654614425723358,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}