{"id":"W4392589998","doi":"10.1177/10406387241235968","title":"Laboratory tools for the direct detection of bacterial respiratory infections and antimicrobial resistance: a scoping review","year":2024,"lang":"en","type":"review","venue":"Journal of Veterinary Diagnostic Investigation","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; University of Alberta","funders":"Western College of Veterinary Medicine, University of Saskatchewan; Genome Prairie; Genome Alberta; University of Alberta; Ministry of Agriculture - Saskatchewan; Genome Canada","keywords":"Metagenomics; Biology; Antibiotic resistance; Antimicrobial stewardship; Computational biology; Drug resistance; Biotechnology; Microbiology; Antibiotics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02283972,0.00198461,0.005639574,0.02359083,0.001311704,0.005603919,0.0030174,0.004377174,0.00638476],"category_scores_gemma":[0.08417509,0.001471265,0.006594446,0.01904615,0.00154437,0.005972206,0.003044904,0.002404319,0.001804189],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003940938,"about_ca_system_score_gemma":0.01865103,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006196184,"about_ca_topic_score_gemma":0.01105466,"domain_scores_codex":[0.9845329,0.004818208,0.006424442,0.0009374156,0.002935189,0.0003518297],"domain_scores_gemma":[0.8967319,0.07679562,0.01062564,0.001839356,0.01344434,0.000563097],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","study_design_scores_codex":[0.0001034448,0.00003462414,0.0005414924,0.7928692,0.00173885,0.0002253607,0.0006320299,0.0002541457,0.0007154083,0.001694324,0.009143367,0.1920477],"study_design_scores_gemma":[0.00002202304,0.00007238741,0.0009485124,0.8997161,0.005185077,0.000258021,0.0003803565,0.0001018169,0.0003434146,0.001042354,0.09189525,0.00003472659],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003110658,0.9955858,0.0009434928,0.0009759621,0.0005002647,0.000444821,0.0003223428,0.00002296902,0.0008932401],"genre_scores_gemma":[0.002255083,0.9935103,0.001924048,0.0007269636,0.0001968819,0.0007417765,0.0003478973,0.00001535608,0.0002816641],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.02359083,"threshold_uncertainty_score":0.1207895,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08985194810068188,"score_gpt":0.3783500898930912,"score_spread":0.2884981417924093,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}