{"id":"W4392592207","doi":"10.1016/j.heliyon.2024.e27818","title":"Genomic epidemiology in Streptococcus suis: Moving beyond traditional typing techniques","year":2024,"lang":"en","type":"article","venue":"Heliyon","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Kasetsart University Research and Development Institute; Kasetsart University","keywords":"Streptococcus suis; Typing; Epidemiology; Genetics; Biology; Multilocus sequence typing; Computational biology; Microbiology; Medicine; Genotype; Gene; Pathology; Virulence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007525966,0.0006048547,0.001057654,0.003733733,0.0002877396,0.003114233,0.001048419,0.001506708,0.001746513],"category_scores_gemma":[0.00938482,0.0003683323,0.0004304309,0.002834425,0.001856703,0.003396307,0.001870201,0.002452958,0.000684794],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009006423,"about_ca_system_score_gemma":0.001280595,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002533579,"about_ca_topic_score_gemma":0.002845064,"domain_scores_codex":[0.9968091,0.001749634,0.0001993554,0.0004380892,0.0006551328,0.0001486475],"domain_scores_gemma":[0.9915174,0.004142907,0.001262077,0.0008490482,0.00148928,0.000739213],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.0002859517,0.0001730992,0.1647177,0.001971421,0.0001774914,0.0005092499,0.001770718,0.001451293,0.01844133,0.01416807,0.009125936,0.7872078],"study_design_scores_gemma":[0.00006085076,0.001431813,0.4988255,0.004841876,0.0004392193,0.006973299,0.008310744,0.01031705,0.008695638,0.08787455,0.3719446,0.0002849638],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"review","genre_gemma":"empirical","genre_scores_codex":[0.2760049,0.4010682,0.1869572,0.1128902,0.002677216,0.0002339096,0.002029541,0.001028307,0.01711071],"genre_scores_gemma":[0.4978846,0.2731561,0.1996587,0.01668227,0.005875099,0.0002100835,0.001838952,0.0002947052,0.00439953],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.007525966,"threshold_uncertainty_score":0.0398016,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0625612747390062,"score_gpt":0.34126769981239,"score_spread":0.2787064250733838,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}