{"id":"W4392592207","doi":"10.1016/j.heliyon.2024.e27818","title":"Genomic epidemiology in Streptococcus suis: Moving beyond traditional typing techniques","year":2024,"lang":"en","type":"article","venue":"Heliyon","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Kasetsart University Research and Development Institute; Kasetsart University","keywords":"Streptococcus suis; Typing; Epidemiology; Genetics; Biology; Multilocus sequence typing; Computational biology; Microbiology; Medicine; Genotype; Gene; Pathology; Virulence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002135067,0.0001257015,0.0002419118,0.0002705111,0.00004405052,0.0000127697,0.00003174749,0.0001169626,0.0005116384],"category_scores_gemma":[0.00009181289,0.000107005,0.0001033022,0.0001953903,0.00004510341,0.00006834946,0.00001962081,0.0002334296,0.000163081],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002540975,"about_ca_system_score_gemma":0.00008015201,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000486647,"about_ca_topic_score_gemma":0.00002478223,"domain_scores_codex":[0.9990786,0.00005030359,0.0002909568,0.0002965383,0.00004948567,0.0002341171],"domain_scores_gemma":[0.9994712,0.0002596033,0.0000268988,0.0001478072,0.0000199132,0.00007452578],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003999081,0.0002616099,0.9114167,0.0004918274,0.0001407524,0.0002451228,0.0001153951,0.00001343624,0.0125701,0.01908451,0.0005459479,0.05507461],"study_design_scores_gemma":[0.0006995473,0.0004851259,0.9649816,0.002028881,0.0001011407,0.0002577713,0.00006941715,0.0006275721,0.005959544,0.01145245,0.01309667,0.0002402603],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9640378,0.00988296,0.0005942814,0.001005704,0.0003430186,0.000826992,0.00004005437,0.0004208116,0.02284843],"genre_scores_gemma":[0.9960591,0.0007125705,0.001599134,0.0003483708,0.0003431201,0.0003018018,0.00007266798,0.00002486878,0.0005384191],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05483435,"threshold_uncertainty_score":0.5602081,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0625612747390062,"score_gpt":0.34126769981239,"score_spread":0.2787064250733838,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}