{"id":"W4392613347","doi":"10.1101/2024.03.03.24303663","title":"Nasopharyngeal metatranscriptomics reveals host-pathogen signatures of pediatric sinusitis","year":2024,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Respiratory viral infections research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Joseph’s Healthcare Hamilton; University of British Columbia; McMaster University; St. Joseph's Hospital; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Ministry of Colleges and Universities; National Institute of Allergy and Infectious Diseases; Alliance de recherche numérique du Canada; Government of Ontario","keywords":"Pathogen; Biology; Rhinovirus; Virology; Microbiological culture; Pathogenic bacteria; Virus; Microbiology; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003764119,0.000405789,0.0005649404,0.0006923695,0.00024473,0.0008674779,0.0002204356,0.0004403659,0.0006301888],"category_scores_gemma":[0.0005440128,0.0002714761,0.000659968,0.000494279,0.000218469,0.0004377958,0.000482501,0.0005286784,0.0003336253],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003578504,"about_ca_system_score_gemma":0.0003255643,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001243813,"about_ca_topic_score_gemma":0.002187663,"domain_scores_codex":[0.9996208,0.00004800483,0.00002184037,0.000157118,0.00008827234,0.00006399658],"domain_scores_gemma":[0.9997445,0.0000792811,0.00005922317,0.0000273925,0.00006477761,0.00002476661],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003138725,0.00004951595,0.04922631,0.0002533149,0.0001392485,0.0001142016,0.0002826058,0.001513572,0.932942,0.0001927006,0.0003052712,0.01466746],"study_design_scores_gemma":[0.00003027516,0.0006688383,0.6760746,0.0001470025,0.0005724042,0.001037108,0.001687756,0.04916225,0.252573,0.00214114,0.01576868,0.0001370277],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9830828,0.00236833,0.00816091,0.0001347472,0.0000340887,0.00003186091,0.004910901,0.0001158852,0.001160575],"genre_scores_gemma":[0.9783902,0.00144427,0.01038799,0.0002825873,0.00004431087,0.00006941173,0.008533467,0.000099264,0.0007485569],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001243813,"threshold_uncertainty_score":0.002596378,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04585800748840646,"score_gpt":0.3467925861873737,"score_spread":0.3009345786989673,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}