{"id":"W4392653117","doi":"10.3389/fmed.2024.1363045","title":"Addressing bias in the definition of SARS-CoV-2 reinfection: implications for underestimation","year":2024,"lang":"en","type":"article","venue":"Frontiers in Medicine","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Weill Cornell Medical College; Weill Cornell Medicine - Qatar; Sidra Medicine; Hamad Medical Corporation","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Incidence (geometry); Population; Coronavirus disease 2019 (COVID-19); Window of opportunity; Medicine; Epidemiology; Incubation period; Window period; Demography; Pediatrics; Internal medicine; Immunology; Biology; Serology; Mathematics; Disease; Infectious disease (medical specialty); Environmental health; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009110066,0.0001075738,0.0002760467,0.0005617295,0.00006023121,0.0000141287,0.00006445046,0.000086764,0.000003566965],"category_scores_gemma":[0.001227406,0.00007722751,0.00005505626,0.0009503595,0.0001170557,0.00009633305,0.000007774293,0.0002379048,0.000002069639],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001324272,"about_ca_system_score_gemma":0.00007421299,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001120991,"about_ca_topic_score_gemma":0.00006731955,"domain_scores_codex":[0.9989747,0.00006943519,0.0004311162,0.0002067218,0.0001640894,0.000153912],"domain_scores_gemma":[0.9992169,0.0003997149,0.00008818639,0.0002027117,0.00007928451,0.00001316763],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0005851781,0.0003986525,0.0671618,0.003046336,0.0001990699,0.0000597787,0.009754595,0.00006085465,0.6098635,0.02573342,0.1195933,0.1635434],"study_design_scores_gemma":[0.01620418,0.003515105,0.202952,0.02057162,0.001330797,0.001501506,0.01045717,0.1441307,0.2298222,0.3260129,0.04253241,0.0009694234],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5549967,0.004022245,0.4071662,0.0173135,0.002138744,0.001538199,0.00001063259,0.0002038412,0.01260998],"genre_scores_gemma":[0.9845128,0.00003966728,0.01354246,0.001436412,0.0002682909,0.0001305046,0.00004036177,0.00001907411,0.00001043399],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4295161,"threshold_uncertainty_score":0.3149246,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.3099581104706595,"score_gpt":0.4184105108783738,"score_spread":0.1084524004077143,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}