{"id":"W4392711583","doi":"10.20944/preprints202403.0561.v1","title":"Genomic and Phenotypic Analysis of Salmonella enterica Bac-Teriophages Identifies Two Novel Phage Species","year":2024,"lang":"en","type":"preprint","venue":"Preprints.org","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; University of Guelph; Agriculture and Agri-Food Canada; University of British Columbia; McGill University","funders":"Genome Canada","keywords":"Biology; Siphoviridae; Salmonella enterica; Microbiology; Myoviridae; Genome; Phage therapy; Bacteriophage; Host adaptation; Prophage; Virulence; Salmonella; Genetics; Gene; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001063284,0.0003178407,0.0001725245,0.0005584102,0.0001498676,0.0003335846,0.00009880747,0.0002743479,0.0004970294],"category_scores_gemma":[0.0003407999,0.0001358857,0.0003549212,0.0003341839,0.0001835284,0.0001692666,0.0003259034,0.000317052,0.0002469603],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009844857,"about_ca_system_score_gemma":0.0001654244,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008802995,"about_ca_topic_score_gemma":0.001012242,"domain_scores_codex":[0.999863,0.00001099557,0.00001813627,0.00004123915,0.00003892926,0.00002762189],"domain_scores_gemma":[0.9996785,0.0000773115,0.0000872028,0.0000259008,0.00005857043,0.00007260749],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001162303,0.00004121514,0.01403983,0.00005408068,0.000009323842,0.000081812,0.00009877159,0.00003588149,0.9819437,0.00002594918,0.00001657034,0.003536473],"study_design_scores_gemma":[0.00002331748,0.001181619,0.7496887,0.00003510652,0.00007833013,0.003091444,0.0007606855,0.001087266,0.2419879,0.00009260191,0.001952416,0.00002063066],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983361,0.0001120617,0.0009071619,0.00001510015,0.000003128725,0.00001407782,0.0003063237,0.000009564562,0.0002965471],"genre_scores_gemma":[0.9943107,0.0001718013,0.003295761,0.00002685039,0.000004238357,0.00002639827,0.001519427,0.00000880552,0.0006359592],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008802995,"threshold_uncertainty_score":0.00175035,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06012377327414085,"score_gpt":0.3160036176798361,"score_spread":0.2558798444056952,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}