{"id":"W4392762213","doi":"10.1101/2024.03.12.584643","title":"The occurrence of <i>Aerococcus urinaeequi</i> and non-aureus Staphylococci in raw milk negatively correlates with <i>Escherichia coli</i> clinical mastitis","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; McGill University; Fonds de Recherche du Québec – Nature et Technologies; Cegep de Saint Hyacinthe","funders":"Agriculture and Agri-Food Canada; Dairy Farmers of Canada","keywords":"Udder; Microbiome; Metagenomics; Mastitis; Biology; Escherichia coli; Raw milk; Microbiology; Staphylococcus aureus; Bacteria; Food science; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002670547,0.0002591731,0.0003282111,0.0005298594,0.0002584769,0.000617876,0.0001468792,0.0003451685,0.001287623],"category_scores_gemma":[0.0006524806,0.0001613731,0.0002557132,0.0004627875,0.0002204987,0.0002248649,0.0002854325,0.0003583796,0.0001764816],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001600005,"about_ca_system_score_gemma":0.0001135367,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001374905,"about_ca_topic_score_gemma":0.001741067,"domain_scores_codex":[0.9996325,0.00005777675,0.00004300632,0.00009307206,0.00009528738,0.00007827378],"domain_scores_gemma":[0.9992157,0.0001094963,0.0004122262,0.00002789734,0.0001201291,0.0001143672],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005834817,0.00008677128,0.9133021,0.00006266851,0.00007976079,0.0001216078,0.0000675414,0.00006295791,0.08188646,0.00001119483,0.0001280525,0.00360742],"study_design_scores_gemma":[0.0000013032,0.0001264689,0.9959378,0.000007213997,0.00002086536,0.000226929,0.0001353087,0.000157238,0.003241658,0.00000923998,0.0001336939,0.000002166192],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991067,0.0003475995,0.0001131035,0.00002425221,0.000004153145,0.000003549187,0.0001661509,0.000004822522,0.0002296408],"genre_scores_gemma":[0.9992856,0.000103661,0.0002189666,0.00002534239,0.000006755255,0.000003418004,0.0002234828,0.000001544157,0.0001311196],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001374905,"threshold_uncertainty_score":0.004307508,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01736674445527073,"score_gpt":0.2333288033238704,"score_spread":0.2159620588685997,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}