{"id":"W4392770418","doi":"10.1186/s12879-024-09042-4","title":"Clinic-based evaluation of the dual Xpert CT/NG assay on the GeneXpert System for screening for extragenital chlamydial and gonococcal infections amongst men who have sex with men","year":2024,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Government of Canada; UNICEF; World Health Organization","keywords":"GeneXpert MTB/RIF; Medicine; Chlamydia trachomatis; Men who have sex with men; Point-of-care testing; Neisseria gonorrhoeae; Gonorrhea; Nucleic Acid Amplification Tests; Chlamydia; Medical microbiology; Syphilis; Sexual health clinic; Asymptomatic; Internal medicine; Population; Gynecology; Tuberculosis; Virology; Mycobacterium tuberculosis; Immunology; Pathology; Human immunodeficiency virus (HIV); Biology; Environmental health; Microbiology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002847332,0.0006889921,0.000377026,0.0006307846,0.0003003399,0.0004557232,0.0005658697,0.0004937313,0.001063163],"category_scores_gemma":[0.005460463,0.0003953287,0.0003245144,0.0003887583,0.0004629812,0.0002284396,0.000637395,0.0003256767,0.0003733198],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003860973,"about_ca_system_score_gemma":0.0003362196,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003577458,"about_ca_topic_score_gemma":0.004250207,"domain_scores_codex":[0.9967064,0.002135439,0.000113687,0.0004248098,0.0005061397,0.0001135374],"domain_scores_gemma":[0.9971433,0.001015579,0.0005776068,0.0002354297,0.0008003423,0.0002277065],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002951309,0.002759892,0.9263911,0.0003521047,0.0001790689,0.0007968062,0.002614293,0.0008574451,0.0206973,0.00005765614,0.0004846522,0.0418583],"study_design_scores_gemma":[0.0002050466,0.02830317,0.9545909,0.00004759261,0.0001927793,0.002775297,0.0008440732,0.005196201,0.006697743,0.00002597519,0.001081313,0.00004005697],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982748,0.0001121445,0.0006494311,0.00002393027,0.00000319333,0.0002227631,0.0001348625,0.00003402917,0.0005447632],"genre_scores_gemma":[0.9972841,0.00006895504,0.002012665,0.00003380603,0.000007614055,0.0001050998,0.0001989895,0.000004682025,0.0002841596],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003577458,"threshold_uncertainty_score":0.01505828,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04396965247558487,"score_gpt":0.342711810235703,"score_spread":0.2987421577601181,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}