{"id":"W4392782521","doi":"10.1093/femsec/fiae002","title":"Evaluating the liver abscess microbiota of beef cattle during a reduction in tylosin supplementation shows differences according to abscess size and fraction","year":2024,"lang":"en","type":"article","venue":"FEMS Microbiology Ecology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Genome Alberta; Beef Cattle Research Council; Génome Québec","keywords":"Tylosin; Liver abscess; Biology; Antibiotics; Microbial population biology; Microbiome; Abscess; Antimicrobial; Microbiology; Bacteria; Bioinformatics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003531409,0.0003351258,0.0004056064,0.000429755,0.0003256509,0.0006412285,0.0001197484,0.000332351,0.00132594],"category_scores_gemma":[0.0004801352,0.0001833947,0.0002726863,0.0002908732,0.0003216487,0.0003323687,0.0003221517,0.0005284777,0.0002518693],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002790223,"about_ca_system_score_gemma":0.0002899319,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002965755,"about_ca_topic_score_gemma":0.004921025,"domain_scores_codex":[0.9996136,0.00006824147,0.00002455393,0.0001004641,0.00009291918,0.0001002162],"domain_scores_gemma":[0.9996955,0.00005240455,0.000087227,0.00001055396,0.00006678041,0.00008749985],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001631444,0.0001826248,0.03596618,0.0001809649,0.0000457067,0.0000962938,0.0005151764,0.00009629747,0.9525787,0.00004298007,0.0001218291,0.008541828],"study_design_scores_gemma":[0.00002650216,0.005088934,0.7792362,0.0001187756,0.00019317,0.0004595356,0.003246678,0.001227431,0.2056761,0.0002317739,0.004438658,0.00005617269],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979331,0.0005222087,0.0005405647,0.00006718238,0.00001249336,0.0000173971,0.0004718892,0.000009348299,0.0004258101],"genre_scores_gemma":[0.9946933,0.0005411115,0.001770981,0.0001855477,0.00001203136,0.00004831957,0.0009015743,0.00001351996,0.0018335],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002965755,"threshold_uncertainty_score":0.005896986,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02457251838742265,"score_gpt":0.3354060326452828,"score_spread":0.3108335142578602,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}