{"id":"W4392804826","doi":"10.1186/s12915-024-01843-y","title":"DNA methylation haplotype block signatures responding to Staphylococcus aureus subclinical mastitis and association with production and health traits","year":2024,"lang":"en","type":"article","venue":"BMC Biology","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Université Laval; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; China Scholarship Council","keywords":"DNA methylation; Biology; Methylation; Mastitis; Differentially methylated regions; Staphylococcus aureus; Somatic cell count; Gene; Genetics; Subclinical infection; Bisulfite sequencing; Gene expression; Microbiology; Lactation; Virology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001728711,0.000114386,0.0001570941,0.0003772856,0.00008268658,0.0001471518,0.00007549128,0.0001588236,0.0007801232],"category_scores_gemma":[0.0003078901,0.00006982801,0.0001008051,0.0002880893,0.0001159125,0.00005372394,0.000148784,0.0001248487,0.00007809896],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009743839,"about_ca_system_score_gemma":0.00007979847,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009026655,"about_ca_topic_score_gemma":0.001433458,"domain_scores_codex":[0.9999102,0.00001384305,0.000006338174,0.00003514905,0.00001706732,0.00001738026],"domain_scores_gemma":[0.9997627,0.00005886893,0.0001103927,0.00001236151,0.00002522911,0.0000303885],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006130516,0.00002353594,0.6307544,0.00006747376,0.0001276591,0.0001005843,0.0001649186,0.0002707744,0.3589934,0.00004363735,0.00006193872,0.008778762],"study_design_scores_gemma":[0.000004598599,0.00008746659,0.9921176,0.000003098793,0.00003362542,0.0001831073,0.0000535889,0.0006173748,0.006691019,0.00005058838,0.0001555596,0.00000245436],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990166,0.0002114644,0.0004575971,0.000008194531,9.767102e-7,0.000002954235,0.0001897701,0.000004655542,0.0001077981],"genre_scores_gemma":[0.9993621,0.00005055187,0.0003032991,0.000007616608,0.000001528453,0.000003923948,0.000182087,0.000001287043,0.00008772162],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009026655,"threshold_uncertainty_score":0.002609789,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05009373789955424,"score_gpt":0.3137460765741713,"score_spread":0.263652338674617,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}