{"id":"W4392851236","doi":"10.2807/1560-7917.es.2024.29.11.2400106","title":"Ongoing mpox outbreak in Kamituga, South Kivu province, associated with monkeypox virus of a novel Clade I sub-lineage, Democratic Republic of the Congo, 2024","year":2024,"lang":"en","type":"article","venue":"Eurosurveillance","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":146,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"European and Developing Countries Clinical Trials Partnership; Dalhousie University; Conservation Action Research Network","keywords":"Monkeypox; Clade; Outbreak; Lineage (genetic); Phylogenetic tree; Virology; Whole genome sequencing; Biology; Phylogenetics; Virus; Genome; Geography; Evolutionary biology; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007039833,0.0002680957,0.0005552897,0.000230489,0.0001055943,0.00002995677,0.0005159735,0.0002415278,0.00004835174],"category_scores_gemma":[0.001238909,0.0001806592,0.0001533181,0.0009878848,0.0006128456,0.0001156483,0.0002167463,0.0008281203,0.00004332372],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007445314,"about_ca_system_score_gemma":0.000590348,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003700948,"about_ca_topic_score_gemma":0.002275486,"domain_scores_codex":[0.9975724,0.000488238,0.0006533158,0.000494803,0.0001932799,0.0005979312],"domain_scores_gemma":[0.9984446,0.0005136558,0.0002791764,0.000552693,0.000167782,0.00004208704],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000496541,0.0005264052,0.149801,0.0002919865,0.0004935542,0.00008517284,0.001306422,0.000148682,0.840521,0.0004559461,0.004674231,0.001199042],"study_design_scores_gemma":[0.00406728,0.0006278115,0.7931859,0.001130288,0.00004242346,0.0001283276,0.0001207838,0.000957205,0.1905387,0.00003824564,0.008618583,0.0005444009],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9919956,0.003382387,0.0001065755,0.0001386094,0.0004892963,0.0005309156,0.0005835915,0.00008550702,0.002687535],"genre_scores_gemma":[0.9929707,0.0001125612,0.00001963662,0.00009003883,0.00002580196,0.00002471338,0.00003920499,0.00004176224,0.006675562],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6499823,"threshold_uncertainty_score":0.736707,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0174999158138201,"score_gpt":0.2439498789755119,"score_spread":0.2264499631616918,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}