{"id":"W4392851236","doi":"10.2807/1560-7917.es.2024.29.11.2400106","title":"Ongoing mpox outbreak in Kamituga, South Kivu province, associated with monkeypox virus of a novel Clade I sub-lineage, Democratic Republic of the Congo, 2024","year":2024,"lang":"en","type":"article","venue":"Eurosurveillance","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":146,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"European and Developing Countries Clinical Trials Partnership; Dalhousie University; Conservation Action Research Network","keywords":"Monkeypox; Clade; Outbreak; Lineage (genetic); Phylogenetic tree; Virology; Whole genome sequencing; Biology; Phylogenetics; Virus; Genome; Geography; Evolutionary biology; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001290627,0.0003238413,0.0001511364,0.0004749819,0.001220858,0.0005572469,0.0001872996,0.0003930489,0.0006162496],"category_scores_gemma":[0.0004387186,0.0001697168,0.0001421032,0.0003040974,0.0005786144,0.0002391336,0.000307893,0.0003911209,0.00008920606],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004612234,"about_ca_system_score_gemma":0.0003411859,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01399856,"about_ca_topic_score_gemma":0.01994881,"domain_scores_codex":[0.9998558,0.00002851322,0.00001446226,0.00003839897,0.00002187797,0.00004100696],"domain_scores_gemma":[0.9998159,0.00003789759,0.00007352309,0.00001171004,0.00002153102,0.00003944282],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000257997,0.0001060426,0.9296411,0.00009905644,0.00004851885,0.02340694,0.005664962,0.000143143,0.03497698,0.0001397118,0.0003397691,0.005175746],"study_design_scores_gemma":[0.00001968604,0.0001957447,0.954457,0.00004994169,0.00005882234,0.03042336,0.006896177,0.000376034,0.005125377,0.00009334607,0.002287913,0.00001663749],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992235,0.000106505,0.0001185517,0.00004188254,0.000004049139,0.00001433374,0.00007993093,0.000002274086,0.0004090855],"genre_scores_gemma":[0.9993898,0.0001233935,0.000155816,0.00002906049,0.000006657709,0.000008357442,0.0001534451,8.944666e-7,0.0001325492],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01399856,"threshold_uncertainty_score":0.02783418,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0174999158138201,"score_gpt":0.2439498789755119,"score_spread":0.2264499631616918,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}