{"id":"W4392897249","doi":"10.3390/v16030460","title":"A Novel Tiled Amplicon Sequencing Assay Targeting the Tomato Brown Rugose Fruit Virus (ToBRFV) Genome Reveals Widespread Distribution in Municipal Wastewater Treatment Systems in the Province of Ontario, Canada","year":2024,"lang":"en","type":"article","venue":"Viruses","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo","funders":"University of Waterloo; Natural Sciences and Engineering Research Council of Canada; Ministère de l’Environnement, de la Protection de la nature et des Parcs; Mitacs; Ministry of Environment","keywords":"Biology; Genome; Amplicon; Begomovirus; Plant virus; Virus; Virology; Lineage (genetic); Crop; Genetics; Biotechnology; Gene; Polymerase chain reaction; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003695588,0.000462634,0.0003409612,0.001030288,0.00066252,0.000614399,0.0003777742,0.000452068,0.001348096],"category_scores_gemma":[0.0009602408,0.0002913912,0.000425319,0.0007091664,0.0004651585,0.0002002148,0.0004405956,0.0003729577,0.0006095318],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001812627,"about_ca_system_score_gemma":0.00202628,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1350319,"about_ca_topic_score_gemma":0.3984869,"domain_scores_codex":[0.9991628,0.000044183,0.00003015123,0.0003193231,0.0003167662,0.0001268262],"domain_scores_gemma":[0.9995784,0.00007761942,0.0000927111,0.0000416252,0.0001406171,0.00006904398],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001973499,0.00004073579,0.03483918,0.00009838813,0.00004652622,0.0001022267,0.0004624075,0.001136163,0.9472568,0.000322975,0.0005699868,0.01492722],"study_design_scores_gemma":[0.00002918064,0.0005908502,0.3304811,0.00008432479,0.0001586231,0.0006223472,0.0007434065,0.02314245,0.6226468,0.0003509459,0.02105381,0.00009609982],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.933209,0.0005224625,0.04700458,0.0001407839,0.00003091963,0.0002276277,0.01227615,0.001173898,0.005414627],"genre_scores_gemma":[0.8231672,0.0006344781,0.1475221,0.0003168338,0.00001211863,0.0002879914,0.01956981,0.0002173952,0.008272046],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8649681,"threshold_uncertainty_score":0.2684919,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0522873387589321,"score_gpt":0.2600886046214337,"score_spread":0.2078012658625016,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}