{"id":"W4392953152","doi":"10.1128/mbio.03403-23","title":"Alternate typhoid toxin assembly evolved independently in the two <i>Salmonella</i> species","year":2024,"lang":"en","type":"article","venue":"mBio","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Innovates; University of Alberta; Universities Space Research Association","keywords":"Salmonella typhi; Typhoid fever; Toxin; Protein subunit; Biology; Salmonella; Microbiology; Salmonella enterica; Bacteria; Escherichia coli; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001474191,0.0003124067,0.0001930968,0.0003192103,0.0002644284,0.0004549406,0.0002279085,0.0003773416,0.0003315962],"category_scores_gemma":[0.00015692,0.0001632357,0.0003161206,0.0001747597,0.0002739329,0.0003185743,0.0007443212,0.0005047356,0.0001718828],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004334251,"about_ca_system_score_gemma":0.0002253736,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009243487,"about_ca_topic_score_gemma":0.000930633,"domain_scores_codex":[0.9998691,0.00001698457,0.00001165972,0.00002790366,0.00002712409,0.00004714891],"domain_scores_gemma":[0.9998858,0.000008971138,0.00003726503,0.00001743174,0.00001981015,0.00003067077],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007102607,0.0000200229,0.00382436,0.00002187347,0.000005415045,0.0001800132,0.00007818504,0.00003464659,0.994321,0.000166618,0.0000193201,0.001257471],"study_design_scores_gemma":[0.00003919814,0.001336977,0.2812055,0.00005956876,0.0001055431,0.006312869,0.001426368,0.003716327,0.6929328,0.0004768918,0.01231946,0.00006845868],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999002,0.00009979648,0.0003396867,0.00003566136,0.000007071385,0.000005434937,0.000034957,0.000008784565,0.0004665911],"genre_scores_gemma":[0.9980939,0.00009556457,0.001010066,0.00004800868,0.000003515471,0.00000653041,0.0002139868,0.0000076807,0.0005207108],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009243487,"threshold_uncertainty_score":0.003144741,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03384829359448777,"score_gpt":0.2620848958388529,"score_spread":0.2282366022443651,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}