{"id":"W4392953860","doi":"10.1128/spectrum.00508-24","title":"Genetic and chemical control of tuberculostearic acid production in <i>Mycobacterium avium</i> subspecies <i>paratuberculosis</i>","year":2024,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Agricultural Research Service; U.S. Department of Agriculture","keywords":"Mycobacterium avium subspecies paratuberculosis; Paratuberculosis; Subspecies; Mycobacterium; Microbiology; Biology; Mycobacterium avium subsp. paratuberculosis; Mycobacterium avium complex; Genetics; Bacteria; Zoology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002267841,0.0002205476,0.0005077205,0.0002879741,0.00002644483,0.0000294543,0.00008636643,0.0002192754,0.0001579976],"category_scores_gemma":[0.0001124489,0.0001837748,0.0001067506,0.0003978961,0.0003323446,0.00007900133,0.00006622493,0.0003960546,0.00006063651],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001032391,"about_ca_system_score_gemma":0.0001170268,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005985412,"about_ca_topic_score_gemma":0.00005421366,"domain_scores_codex":[0.9983782,0.0000998254,0.0003959234,0.0005486254,0.00008214171,0.0004953114],"domain_scores_gemma":[0.9994006,0.0001049459,0.00003926031,0.0002804556,0.00004571891,0.0001289968],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000313685,0.0001275467,0.08456705,0.000356189,0.00009163007,0.0001022833,0.0001090983,3.912054e-7,0.9114637,0.00006802566,0.002411608,0.0003888035],"study_design_scores_gemma":[0.001177295,0.000409196,0.1112941,0.0002367835,0.0001472852,0.001885695,0.00004141734,0.00003031295,0.8803664,0.0001279474,0.004070266,0.0002132491],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9833276,0.008583405,0.00001084757,0.006698834,0.0003578036,0.0005251363,0.0001049577,0.00006640628,0.0003250255],"genre_scores_gemma":[0.9976871,0.001295559,0.0001486296,0.0002944088,0.0003141181,0.00004802781,0.00006715688,0.0000263196,0.0001186943],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03109725,"threshold_uncertainty_score":0.7494119,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00700346712821289,"score_gpt":0.2361129491474596,"score_spread":0.2291094820192467,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}