{"id":"W4393057683","doi":"10.1101/gr.278343.123","title":"Robust chromatin state annotation","year":2024,"lang":"en","type":"article","venue":"Genome Research","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Mitacs; Compute Canada","keywords":"Chromatin; Annotation; Biology; Computational biology; Genome; Epigenomics; Computer science; State (computer science); Genetics; DNA methylation; Gene; Algorithm","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003889371,0.001692932,0.00156227,0.002853914,0.001247311,0.002433962,0.002688294,0.001792443,0.008221586],"category_scores_gemma":[0.01288031,0.0009803761,0.002168518,0.002495331,0.0007519926,0.002170188,0.002468846,0.002544413,0.006785515],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009242856,"about_ca_system_score_gemma":0.001362803,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002708557,"about_ca_topic_score_gemma":0.004881381,"domain_scores_codex":[0.9957004,0.0005773625,0.0002831821,0.001858972,0.001326011,0.0002540372],"domain_scores_gemma":[0.992614,0.002089562,0.0005528816,0.002771733,0.001822362,0.0001494969],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001087269,0.0001905211,0.0248452,0.00250119,0.0005593412,0.0006786131,0.00107237,0.04604614,0.2941153,0.03098686,0.05147435,0.5464427],"study_design_scores_gemma":[0.0001154171,0.0002176308,0.02362571,0.0003375596,0.0003958714,0.001070682,0.0003342186,0.3337663,0.3582588,0.07056585,0.2109396,0.0003723211],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.02518716,0.001735489,0.9171792,0.0002258571,0.0003032057,0.0002124303,0.02183741,0.02702046,0.006298845],"genre_scores_gemma":[0.190085,0.0008998173,0.7141073,0.0005512378,0.0001662754,0.0005786233,0.07964706,0.006681606,0.007283039],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.008221586,"threshold_uncertainty_score":0.02750397,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04793057124054938,"score_gpt":0.3274774270682498,"score_spread":0.2795468558277004,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}