{"id":"W4393274435","doi":"10.3389/fgene.2024.1355134","title":"Effect of a probiotic and an antibiotic on the mobilome of the porcine microbiota","year":2024,"lang":"en","type":"article","venue":"Frontiers in Genetics","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Mitel (Canada); Université de Sherbrooke; Université de Montréal; Centre de Recherche en Sciences Animales de Deschambault","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Université Laval","keywords":"Antibiotics; Antibiotic resistance; Microbiome; Biology; Microbiology; Probiotic; Pediococcus acidilactici; Resistome; Metagenomics; Feces; Bacteria; Biotechnology; Gene; Genetics; Integron","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003707707,0.0001350365,0.0001851611,0.00005799768,0.00003490743,0.00001221142,0.0002263093,0.0001221867,0.000002418688],"category_scores_gemma":[0.00002793629,0.00007614496,0.00006297455,0.0001683717,0.0002240567,0.000001460253,0.00008954022,0.0001278234,6.068333e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001270255,"about_ca_system_score_gemma":0.00006861697,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008603193,"about_ca_topic_score_gemma":0.00001051812,"domain_scores_codex":[0.9991229,0.0001742969,0.0002149359,0.0002500216,0.00006492932,0.0001729715],"domain_scores_gemma":[0.9994441,0.00002219207,0.00005888295,0.0004227641,0.00002134433,0.00003071877],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000069547,0.00004561873,0.02536022,0.0003854794,0.00003748447,0.00000103303,0.000135346,0.00005837859,0.9676617,0.00005155292,0.003573799,0.002619837],"study_design_scores_gemma":[0.0004157511,0.001921029,0.03745526,0.0002633432,0.00005666647,0.00001472814,0.00006568737,0.0004042323,0.9569042,0.00005413272,0.002309977,0.0001350243],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922135,0.006379209,0.00007068274,0.0002467108,0.0004624747,0.0005076441,0.00003206969,0.000003696292,0.00008400839],"genre_scores_gemma":[0.9985743,0.000609973,0.0004687307,0.00009589537,0.00005531359,0.000002540903,0.00001217811,0.00001954927,0.000161514],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01209505,"threshold_uncertainty_score":0.3105101,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00423515694376696,"score_gpt":0.2492953730749099,"score_spread":0.2450602161311429,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}