{"id":"W4393277846","doi":"10.1038/s41467-024-47047-4","title":"Anaerobic fungi in the tortoise alimentary tract illuminate early stages of host-fungal symbiosis and Neocallimastigomycota evolution","year":2024,"lang":"en","type":"article","venue":"Nature Communications","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"Oklahoma State University; National Science Foundation","keywords":"Biology; Symbiosis; Phylogenetics; Phylogenetic tree; Evolutionary biology; Lineage (genetic); Gene; Zoology; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003505971,0.0001141669,0.0001072591,0.0001127785,0.0000967306,0.00005403638,0.0006663527,0.0002224896,0.000007950043],"category_scores_gemma":[0.00005430091,0.00009439349,0.00005920307,0.0003028321,0.0002177896,0.0000171476,0.000262589,0.0005774761,0.000003638737],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003746172,"about_ca_system_score_gemma":0.00007358885,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001484893,"about_ca_topic_score_gemma":0.000460626,"domain_scores_codex":[0.9990244,0.0002443908,0.000185819,0.0002206029,0.0001496269,0.0001751522],"domain_scores_gemma":[0.9987238,0.0001633661,0.00003870922,0.0009606107,0.00007343345,0.0000400699],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003552343,0.0001598377,0.1423479,0.00004136838,0.00007736714,0.000006108131,0.0004463496,0.000001719983,0.8543185,0.000851695,0.0008977226,0.0008159237],"study_design_scores_gemma":[0.000244991,0.0002873085,0.9537151,0.00008626921,0.00006139818,0.00004304347,0.0003690032,0.0001742943,0.03528001,0.00003827432,0.009521882,0.000178427],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9529638,0.04430413,0.00001527347,0.001960436,0.00005591772,0.0002577355,0.0001254812,0.00001096686,0.000306291],"genre_scores_gemma":[0.9957837,0.00312242,0.0005869404,0.000107303,0.00003271892,0.0000336554,0.0002529666,0.00001432804,0.00006599942],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8190385,"threshold_uncertainty_score":0.3849255,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01193714143083236,"score_gpt":0.2987120081899414,"score_spread":0.2867748667591091,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}