{"id":"W4393352964","doi":"10.3390/microorganisms12040709","title":"Analysis of Antimicrobial Resistance in Bacterial Pathogens Recovered from Food and Human Sources: Insights from 639,087 Bacterial Whole-Genome Sequences in the NCBI Pathogen Detection Database","year":2024,"lang":"en","type":"article","venue":"Microorganisms","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Canada; Carleton University; Canadian Food Inspection Agency","funders":"","keywords":"Biology; Antibiotic resistance; Enterobacter; Listeria; Microbiology; Salmonella; Antimicrobial; Listeria monocytogenes; Escherichia coli; Campylobacter; Bacteria; Antibiotics; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005980506,0.0003514731,0.000602219,0.002316832,0.0003484024,0.0007246648,0.0002441841,0.0005145324,0.0009777276],"category_scores_gemma":[0.001301937,0.0001786152,0.0007214085,0.003236786,0.0001895708,0.0003508053,0.0005458063,0.0003822793,0.000877472],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002254621,"about_ca_system_score_gemma":0.0005307928,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002845309,"about_ca_topic_score_gemma":0.004823851,"domain_scores_codex":[0.9993727,0.00008283817,0.0001074297,0.000192716,0.0001617703,0.00008254308],"domain_scores_gemma":[0.999312,0.000183223,0.0002280347,0.00004151189,0.0001576593,0.00007765374],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00164186,0.000365142,0.4168788,0.003183721,0.0005276647,0.002413169,0.001507739,0.0009822543,0.4905206,0.0003709838,0.003582365,0.0780257],"study_design_scores_gemma":[0.00003891279,0.0004441169,0.9467636,0.000316219,0.0003742292,0.003628954,0.001486893,0.002898228,0.02596494,0.0003270902,0.0176983,0.00005854268],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9576505,0.003987025,0.002099228,0.0001542538,0.00002140053,0.00004573474,0.03478837,0.00008903871,0.001164523],"genre_scores_gemma":[0.8464416,0.004327453,0.02044238,0.0003364724,0.00003459018,0.0001202724,0.127095,0.00008114353,0.001121009],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002845309,"threshold_uncertainty_score":0.005657434,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01897662031388405,"score_gpt":0.2150399433026729,"score_spread":0.1960633229887888,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}