{"id":"W4393352964","doi":"10.3390/microorganisms12040709","title":"Analysis of Antimicrobial Resistance in Bacterial Pathogens Recovered from Food and Human Sources: Insights from 639,087 Bacterial Whole-Genome Sequences in the NCBI Pathogen Detection Database","year":2024,"lang":"en","type":"article","venue":"Microorganisms","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Canada; Carleton University; Canadian Food Inspection Agency","funders":"","keywords":"Biology; Antibiotic resistance; Enterobacter; Listeria; Microbiology; Salmonella; Antimicrobial; Listeria monocytogenes; Escherichia coli; Campylobacter; Bacteria; Antibiotics; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003821868,0.0002416491,0.0005270424,0.00009809141,0.0001276066,0.0001570302,0.000382706,0.0002221593,0.0002631529],"category_scores_gemma":[0.00003930884,0.0001087645,0.0001361874,0.0009861665,0.0001341465,0.0001784578,0.0001112834,0.0001989573,0.000008493644],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005208343,"about_ca_system_score_gemma":0.00001489038,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004129102,"about_ca_topic_score_gemma":0.1100797,"domain_scores_codex":[0.9976782,0.0006225067,0.00059101,0.0006959082,0.0001284268,0.0002839999],"domain_scores_gemma":[0.9991571,0.0004420244,0.0001581798,0.0001655269,0.00002510533,0.00005207573],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001130106,0.00005333234,0.007868565,0.000008475083,0.0001380012,0.00002824841,0.00133195,0.000001609978,0.9897442,0.00001630502,0.00001268225,0.0006836621],"study_design_scores_gemma":[0.0006657699,0.0003220604,0.7766838,0.0001333822,0.0005067588,0.000006197806,0.001070393,0.00002361154,0.2085117,0.001918788,0.009555276,0.000602267],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9894046,0.0008413561,0.00001338218,0.0002147095,0.0003412984,0.0002164459,0.008919174,0.0000313766,0.00001766521],"genre_scores_gemma":[0.9932914,0.00008390637,0.00009861624,0.0001180289,0.0004106797,0.00001089057,0.005974183,0.000003608541,0.000008648638],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7812325,"threshold_uncertainty_score":0.906159,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01897662031388405,"score_gpt":0.2150399433026729,"score_spread":0.1960633229887888,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}