{"id":"W4393614945","doi":"10.5281/zenodo.7778785","title":"Phylogenetic reconstruction and functional characterization of the ancestral Nef protein of primate lentiviruses","year":2023,"lang":"en","type":"dataset","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"","keywords":"Phylogenetic tree; Primate; Evolutionary biology; Phylogenetics; Biology; Genetics; Gene; Neuroscience","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001818322,0.001848578,0.002111607,0.004483219,0.001133073,0.002321449,0.002261274,0.001819129,0.0471666],"category_scores_gemma":[0.004932906,0.0007318283,0.001252408,0.006748661,0.0005034486,0.0009026109,0.001455159,0.002003037,0.03703482],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001260079,"about_ca_system_score_gemma":0.00212331,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008093504,"about_ca_topic_score_gemma":0.01568221,"domain_scores_codex":[0.9988405,0.00022261,0.0001389737,0.0003760998,0.0002328443,0.0001889854],"domain_scores_gemma":[0.9980915,0.0008278434,0.0002256809,0.0003881652,0.0002690163,0.0001977224],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008810476,0.0001166091,0.007504228,0.007364718,0.000561324,0.0002933269,0.0002209414,0.0038727,0.006797079,0.003775723,0.9566606,0.0119517],"study_design_scores_gemma":[0.0005293723,0.00004570738,0.01350449,0.0007720549,0.0002717478,0.0002708937,0.0001259412,0.001388967,0.001885175,0.00290387,0.9782363,0.00006542617],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.00111187,0.0002628101,0.0002231927,0.00003120183,0.00001407225,0.000008172214,0.9973168,0.0003272134,0.0007047062],"genre_scores_gemma":[0.001307139,0.0001081513,0.0005860033,0.0000213936,0.00000276552,0.00003599137,0.9976509,0.00008965769,0.0001979786],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.0471666,"threshold_uncertainty_score":0.157788,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03396288373792037,"score_gpt":0.2578948123416394,"score_spread":0.223931928603719,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}