{"id":"W4393640756","doi":"10.5281/zenodo.1209308","title":"Virtual Chip-Seq Predictions For Tf Binding In Cistrome And Encode-Dream Datasets","year":2018,"lang":"en","type":"dataset","venue":"Figshare","topic":"VLSI and Analog Circuit Testing","field":"Computer Science","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"ENCODE; Computational biology; Computer science; Dream; Biology; Genetics; Neuroscience; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001753604,0.0002840363,0.000298001,0.0003147618,0.0002537612,0.0003367946,0.00128155,0.000244795,0.002500786],"category_scores_gemma":[0.001765837,0.0002936865,0.00006278529,0.0003591595,0.00001678999,0.000464797,0.0006690227,0.0003459305,0.0003586464],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006167639,"about_ca_system_score_gemma":0.000170872,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000329015,"about_ca_topic_score_gemma":0.000144339,"domain_scores_codex":[0.9981998,0.00004899117,0.0003262769,0.000746794,0.0002353841,0.000442707],"domain_scores_gemma":[0.998352,0.0004610738,0.0002077098,0.0007744689,0.00005810043,0.0001466364],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[2.871353e-7,0.00002704931,0.000004069126,0.0001530122,0.00001081516,0.0000248047,0.00002024097,0.000005199758,0.000003449289,0.000004595964,0.9976773,0.002069163],"study_design_scores_gemma":[0.0002704593,0.0001411989,0.0002055743,0.002277274,0.00001253716,0.00005227055,0.000006353362,0.006052316,0.000007654917,0.00003565131,0.990585,0.0003536975],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.000006833255,0.00007365544,0.0004184526,0.00002255748,0.0002166461,0.0003262466,0.998813,0.00009840572,0.00002422704],"genre_scores_gemma":[0.000167129,0.000006816576,0.0001575665,0.00009496665,0.000437915,0.0002408615,0.998855,0.00001477747,0.00002496044],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.0070923,"threshold_uncertainty_score":0.9999515,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04612079177398386,"score_gpt":0.2806521390408998,"score_spread":0.2345313472669159,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}