{"id":"W4393970851","doi":"10.1139/gen-2023-0115","title":"Genomic regions associated with coat color in Gir cattle","year":2024,"lang":"en","type":"article","venue":"Genome","topic":"melanin and skin pigmentation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Coat; Biology; Candidate gene; Breed; Genetics; Genetic architecture; Trait; Quantitative trait locus; Evolutionary biology; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001709523,0.0001692003,0.0001829968,0.0007579264,0.0002356612,0.0002597079,0.0001102301,0.000202435,0.001555323],"category_scores_gemma":[0.0002803534,0.0001279612,0.0003035424,0.0006278938,0.000249925,0.00006140839,0.0002312973,0.000229642,0.0001224923],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001053586,"about_ca_system_score_gemma":0.0001092346,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002181442,"about_ca_topic_score_gemma":0.003113256,"domain_scores_codex":[0.9998459,0.00003510571,0.000008249152,0.00004993298,0.0000263883,0.00003452123],"domain_scores_gemma":[0.9997846,0.00007535801,0.00007420179,0.0000115431,0.000009768698,0.00004448515],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002582235,0.0001597257,0.5372044,0.0001875948,0.0004814355,0.003233884,0.0008868256,0.0006958218,0.4340295,0.0005872424,0.0003559639,0.01959541],"study_design_scores_gemma":[0.00001448418,0.00006909781,0.9967105,0.000007768901,0.0001044821,0.0006802308,0.00008958924,0.0002801976,0.001561002,0.0000618093,0.0004162714,0.000004589618],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990968,0.0002478331,0.0001806868,0.00001658335,0.000003292923,0.000002625066,0.0001793559,0.00000524557,0.0002675779],"genre_scores_gemma":[0.9986643,0.00008599134,0.0004383717,0.0000258958,0.000006273518,0.000004348565,0.0004487663,0.000003573977,0.0003225234],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002181442,"threshold_uncertainty_score":0.005203068,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0108697362833537,"score_gpt":0.2388625293164447,"score_spread":0.227992793033091,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}