{"id":"W4394085413","doi":"10.6084/m9.figshare.22757283","title":"Additional file 2 of Genome-wide assessment and mapping of inbreeding depression identifies candidate genes associated with semen traits in Holstein bulls","year":2023,"lang":"en","type":"dataset","venue":"Figshare","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Inbreeding depression; Genetics; Candidate gene; Semen; Gene; Quantitative trait locus; Inbreeding; Medicine; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001244375,0.00126068,0.001687501,0.002046382,0.0009200747,0.001837127,0.002344731,0.00177846,0.5106359],"category_scores_gemma":[0.01239174,0.0006016922,0.001396581,0.003647219,0.0003374094,0.0009898182,0.001226637,0.001065023,0.07117669],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009142621,"about_ca_system_score_gemma":0.001523311,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01707688,"about_ca_topic_score_gemma":0.02784033,"domain_scores_codex":[0.9993684,0.00009639396,0.0001033043,0.000228788,0.0001008152,0.000102331],"domain_scores_gemma":[0.9929122,0.004959934,0.0005662162,0.0005076706,0.0007484547,0.0003055318],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003674078,0.00008573489,0.008048977,0.004583941,0.0002130626,0.000133374,0.0000890517,0.0006722741,0.0002734959,0.0007403342,0.9798165,0.004975794],"study_design_scores_gemma":[0.006977146,0.0002615014,0.08056414,0.003626902,0.0008127923,0.0007440124,0.0004006101,0.001944738,0.001009708,0.007398205,0.8960799,0.0001804489],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0001029347,0.00001637166,0.00004197,0.00002308679,0.000004099489,0.00001030671,0.9996299,0.00004260972,0.0001287468],"genre_scores_gemma":[0.002535336,0.00006912588,0.0005812782,0.0001389592,0.00001625067,0.0003645533,0.994871,0.0001053416,0.001318154],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.5106359,"threshold_uncertainty_score":0.6980186,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02011535083904157,"score_gpt":0.2480217162952245,"score_spread":0.227906365456183,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}