{"id":"W4394093362","doi":"10.6084/m9.figshare.20167715","title":"Additional file 1 of Comparative genomics analysis and virulence-related factors in novel Aliarcobacter faecis and Aliarcobacter lanthieri species identified as potential opportunistic pathogens","year":2022,"lang":"en","type":"dataset","venue":"Figshare","topic":"Microbial Metabolism and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; University of Prince Edward Island; Agriculture and Agri-Food Canada; Canadian Food Inspection Agency","funders":"","keywords":"Virulence; Biology; Comparative genomics; Microbiology; Genomics; Computational biology; Genetics; Genome; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00002975255,0.000264943,0.0004367929,0.000203844,0.00008698375,0.00004815142,0.0002438293,0.0002565854,0.9534025],"category_scores_gemma":[0.0002315316,0.000273226,0.000146496,0.0002387912,0.00006607583,0.000007288724,0.0004051747,0.0002160465,0.00003736644],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001897349,"about_ca_system_score_gemma":0.0001645017,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006018948,"about_ca_topic_score_gemma":0.0002328538,"domain_scores_codex":[0.9987161,0.00006077359,0.0003818554,0.0005142593,0.0001432418,0.0001837548],"domain_scores_gemma":[0.9990216,0.0001088309,0.0003497448,0.0003438202,0.00008293615,0.00009300774],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001526028,0.00006122852,0.000002371919,0.0000483757,0.0003038522,0.000006297411,0.00003055798,0.000004355536,0.01463942,0.000001288507,0.9848738,0.00001314066],"study_design_scores_gemma":[0.0001652721,0.00002748027,0.00596771,0.00008499526,0.0002086883,0.0000112482,0.00008025189,0.000008279485,0.0005789715,0.00000471952,0.992587,0.0002753437],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.002753502,0.00008081507,8.717674e-7,0.000004595275,0.00002655693,0.0002286363,0.9968715,0.000004989439,0.00002853694],"genre_scores_gemma":[0.0004444052,0.0001038131,0.00005343479,0.00004329718,0.00005641279,0.0002884687,0.9984685,0.00001724329,0.0005244486],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.9533651,"threshold_uncertainty_score":0.999972,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0264553924494372,"score_gpt":0.2499252746183633,"score_spread":0.2234698821689261,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}