{"id":"W4394102716","doi":"10.6084/m9.figshare.19745608.v1","title":"Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae","year":2023,"lang":"en","type":"dataset","venue":"Figshare","topic":"Nanopore and Nanochannel Transport Studies","field":"Engineering","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Klebsiella pneumoniae; Pathogen; Microbiology; Virology; Multi drug resistant; Biology; Minion; Drug resistance; Nanopore sequencing; Computational biology; Genome; Genetics; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001765657,0.002157119,0.001721189,0.002365659,0.0008892544,0.002110468,0.002842024,0.00258939,0.04571562],"category_scores_gemma":[0.008184495,0.0008496916,0.002113302,0.003529618,0.0004564982,0.0008069036,0.00186005,0.001654447,0.03298003],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001132107,"about_ca_system_score_gemma":0.002393134,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01815005,"about_ca_topic_score_gemma":0.03586337,"domain_scores_codex":[0.9989267,0.0002146219,0.0001389522,0.0003984214,0.0001828656,0.0001383737],"domain_scores_gemma":[0.9961075,0.001951808,0.0005422515,0.0006245307,0.0004999067,0.0002739304],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001035925,0.00009344237,0.007499178,0.01042701,0.0007293707,0.0001111714,0.00008439834,0.001858095,0.001814383,0.001078132,0.9670378,0.00823113],"study_design_scores_gemma":[0.002622791,0.0001904587,0.02281204,0.00213031,0.001075737,0.0001987313,0.0001154199,0.00133214,0.002425968,0.003409677,0.9635863,0.0001004215],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.000316442,0.0002340504,0.00009600877,0.00004263594,0.00001428309,0.00001321352,0.9987763,0.0002210813,0.0002860446],"genre_scores_gemma":[0.001201956,0.0001606036,0.0005135904,0.00009487306,0.000006106372,0.0001142221,0.9974819,0.00007432511,0.0003524898],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.04571562,"threshold_uncertainty_score":0.152934,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01782780323106678,"score_gpt":0.2368219489160731,"score_spread":0.2189941456850063,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}