{"id":"W4394102716","doi":"10.6084/m9.figshare.19745608.v1","title":"Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae","year":2023,"lang":"en","type":"dataset","venue":"Figshare","topic":"Nanopore and Nanochannel Transport Studies","field":"Engineering","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Klebsiella pneumoniae; Pathogen; Microbiology; Virology; Multi drug resistant; Biology; Minion; Drug resistance; Nanopore sequencing; Computational biology; Genome; Genetics; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001297669,0.0005380223,0.0007638267,0.00007778724,0.0001784064,0.00003670613,0.000914354,0.0003223469,0.000666233],"category_scores_gemma":[0.0002318829,0.0004364585,0.0004435202,0.0004887841,0.00002499877,0.00004456176,0.0002168754,0.0002641228,0.0004504841],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001572669,"about_ca_system_score_gemma":0.0002068458,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008548379,"about_ca_topic_score_gemma":0.004508989,"domain_scores_codex":[0.9980266,0.00003221037,0.0005849229,0.0004390474,0.000365909,0.00055128],"domain_scores_gemma":[0.9984553,0.0002284824,0.000242379,0.0008144988,0.0001840297,0.00007534303],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001361277,0.0000167954,0.00007551113,0.003336053,0.0001766715,0.00001456406,0.00002023982,0.0001685114,0.0001354615,0.000001380734,0.9959559,0.00008534345],"study_design_scores_gemma":[0.0002364023,0.00002759311,0.00568779,0.001241495,0.00006443991,0.000003577077,0.00002179285,0.0000246055,0.0002040761,0.0000465475,0.9919565,0.0004851908],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0003185165,0.003612914,6.414001e-7,0.0000351747,0.0009344639,0.0008783665,0.9939516,0.0002090394,0.00005929304],"genre_scores_gemma":[0.001025801,0.0005623369,0.00001090318,0.00002065185,0.0002854477,0.0003243488,0.9975548,0.00007315156,0.0001425123],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.005612278,"threshold_uncertainty_score":0.9998087,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01782780323106678,"score_gpt":0.2368219489160731,"score_spread":0.2189941456850063,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}