{"id":"W4394104135","doi":"10.6084/m9.figshare.23735573","title":"Genomic epidemiology and multilevel genome typing of <i>Bordetella pertussis</i>","year":2023,"lang":"en","type":"dataset","venue":"Figshare","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Nine Circles Community Health Centre; London Health Sciences Centre; Western University","funders":"","keywords":"Bordetella pertussis; Typing; Genome; Biology; Epidemiology; Genetics; Computational biology; Medicine; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005831884,0.0002897368,0.0002880775,0.0007962798,0.0001889858,0.0007580272,0.0003503875,0.0005696081,0.0009786871],"category_scores_gemma":[0.002408652,0.0002657375,0.0006557898,0.0008232198,0.0001942609,0.0003538889,0.0009972445,0.0006022789,0.0003920952],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003631637,"about_ca_system_score_gemma":0.0005043703,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005438617,"about_ca_topic_score_gemma":0.005499222,"domain_scores_codex":[0.9989893,0.0002137325,0.00008065278,0.0003452334,0.000225136,0.0001459883],"domain_scores_gemma":[0.9990436,0.0002409106,0.0002843907,0.0001652695,0.0001752936,0.00009045062],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0007746523,0.0002559526,0.3307561,0.0002361173,0.0001967601,0.0002668695,0.0009274172,0.01554675,0.5526298,0.001490637,0.001140132,0.09577892],"study_design_scores_gemma":[0.00005885382,0.001373418,0.6707097,0.0001816104,0.0005551442,0.001287352,0.0007270774,0.1097928,0.1986789,0.001630546,0.01486628,0.0001383595],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"dataset","genre_scores_codex":[0.9395932,0.0002710513,0.05296461,0.0001880754,0.00003711804,0.000104914,0.004007057,0.0005737601,0.002260358],"genre_scores_gemma":[0.8839145,0.0001595871,0.110057,0.0001518981,0.00002062455,0.00009417469,0.004917541,0.00008091151,0.0006036338],"genre_candidate":"dataset","genre_consensus":null,"teacher_disagreement_score":0.005438617,"threshold_uncertainty_score":0.01081395,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0694982150449682,"score_gpt":0.299905710352105,"score_spread":0.2304074953071368,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}