{"id":"W4394146793","doi":"10.6084/m9.figshare.20521407","title":"Additional file 2 of Weighted single-step GWAS and RNA sequencing reveals key candidate genes associated with physiological indicators of heat stress in Holstein cattle","year":2022,"lang":"en","type":"dataset","venue":"Open MIND","topic":"Effects of Environmental Stressors on Livestock","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Heat stress; Biology; Key (lock); Genetics; Computational biology; Gene; Genome-wide association study; Candidate gene; RNA-Seq; Single-nucleotide polymorphism; Genotype; Transcriptome; Ecology; Animal science; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001119391,0.001265389,0.001557022,0.0015155,0.000896337,0.001692939,0.001844327,0.00163822,0.4028585],"category_scores_gemma":[0.009116988,0.0005567648,0.001186209,0.002645904,0.0003138626,0.0007674138,0.0009498409,0.001028987,0.05098283],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006423922,"about_ca_system_score_gemma":0.001292417,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01151456,"about_ca_topic_score_gemma":0.02437588,"domain_scores_codex":[0.9994659,0.00008784107,0.00006979991,0.0002125321,0.00007315986,0.00009074066],"domain_scores_gemma":[0.9956731,0.002852033,0.0003671647,0.0004162244,0.0004568875,0.0002346346],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000647425,0.0001295321,0.01321793,0.004075848,0.0003446141,0.0001669213,0.00009239884,0.0009721429,0.0007619871,0.0007157018,0.9729546,0.005920853],"study_design_scores_gemma":[0.01058829,0.0004333968,0.1148993,0.002518344,0.001241732,0.0009880783,0.000384733,0.002942501,0.001755075,0.008247846,0.8558004,0.000200255],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.000279616,0.0000240735,0.0001049414,0.00002980319,0.000008683891,0.00001445953,0.9993104,0.00007649317,0.0001514771],"genre_scores_gemma":[0.004435189,0.00006046649,0.001135916,0.0002093147,0.00002708053,0.0004158887,0.9919735,0.000169197,0.001573439],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.4028585,"threshold_uncertainty_score":0.8517499,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02058413391791239,"score_gpt":0.2276706550127843,"score_spread":0.2070865210948719,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}