{"id":"W4394231038","doi":"10.6084/m9.figshare.19518543","title":"Additional file 4 of Predicted coronavirus Nsp5 protease cleavage sites in the human proteome","year":2022,"lang":"en","type":"dataset","venue":"Figshare","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Concordia University","funders":"","keywords":"Cleavage (geology); Protease; Coronavirus; Proteome; Coronavirus disease 2019 (COVID-19); Virology; Chemistry; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Computational biology; Biology; Cell biology; Computer science; Biochemistry; Enzyme; Medicine; Infectious disease (medical specialty); Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00005028414,0.0002204467,0.0001951625,0.00006306871,0.0001135676,0.00003156876,0.0007261296,0.0002152278,0.9925681],"category_scores_gemma":[0.001092664,0.0001758803,0.0001216362,0.000127557,0.00001297317,0.000005590683,0.0004214651,0.0003697955,0.0001289847],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001553782,"about_ca_system_score_gemma":0.0001554069,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001597254,"about_ca_topic_score_gemma":0.00002832895,"domain_scores_codex":[0.9988974,0.00007659436,0.0003469673,0.0002284854,0.0002563278,0.0001941863],"domain_scores_gemma":[0.9988778,0.00008885885,0.000354065,0.000597254,0.0000524877,0.00002951208],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001722839,0.000112158,3.065377e-7,0.0003863861,0.00002985678,0.000005655256,0.0000118341,0.000002551609,0.00007694945,1.011505e-7,0.9993156,0.00004138279],"study_design_scores_gemma":[0.0001930516,0.0002677376,0.0004110519,0.0004301741,0.000008810745,0.00001492536,0.00005650973,0.000005698694,0.000171365,0.000002863752,0.9982414,0.0001964117],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.00001736837,0.00007797321,7.100537e-9,0.000006187773,0.000007890633,0.0009549416,0.9986413,0.000005162617,0.0002891711],"genre_scores_gemma":[0.00001336654,0.000003860014,0.00002481781,0.0001266618,0.0001209444,0.008570365,0.9909155,0.00001692511,0.0002075961],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.9924391,"threshold_uncertainty_score":0.7172191,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0369178117837124,"score_gpt":0.2602257045499738,"score_spread":0.2233078927662614,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}