{"id":"W4394254990","doi":"10.6084/m9.figshare.14177093","title":"Additional file 5 of Genome-wide association analysis identified both RNA-seq and DNA variants associated to paratuberculosis in Canadian Holstein cattle ‘in vitro’ experimentally infected macrophages","year":2021,"lang":"en","type":"dataset","venue":"Open MIND","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Paratuberculosis; Biology; RNA-Seq; Genome; DNA; Genetics; Genome-wide association study; In vitro; RNA; Computational biology; Virology; Genotype; Gene; Transcriptome; Single-nucleotide polymorphism; Gene expression","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001286653,0.001448262,0.001785974,0.002000671,0.001491488,0.002174396,0.002718306,0.002213725,0.3933403],"category_scores_gemma":[0.01138169,0.0006725271,0.001442182,0.003710432,0.0005167528,0.0008078075,0.001215211,0.00134121,0.04483146],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002318309,"about_ca_system_score_gemma":0.004321107,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1134319,"about_ca_topic_score_gemma":0.1922774,"domain_scores_codex":[0.999324,0.00008555416,0.00007569884,0.0002440726,0.0001152409,0.0001556254],"domain_scores_gemma":[0.9942709,0.00339083,0.0004038283,0.0005531831,0.0009896,0.0003917148],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004563383,0.00006242144,0.006057587,0.004080197,0.0002098436,0.00008962742,0.00007589768,0.0006164328,0.0003565417,0.0006518647,0.9838036,0.003539712],"study_design_scores_gemma":[0.005847368,0.0001668127,0.06699222,0.003179248,0.0008933892,0.0005015741,0.0003083313,0.001500131,0.001039884,0.005780137,0.9136227,0.000168306],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.00009250425,0.0000203435,0.00003005454,0.00002670673,0.000006609742,0.00001063393,0.9996461,0.00004161203,0.0001255386],"genre_scores_gemma":[0.002296848,0.00007010176,0.0005379983,0.0001724718,0.00001740671,0.0002958705,0.9950908,0.00009969857,0.001418688],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.8865681,"threshold_uncertainty_score":0.8653265,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0174890830329457,"score_gpt":0.3007420244939001,"score_spread":0.2832529414609544,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}