{"id":"W4394284349","doi":"10.6084/m9.figshare.21510520","title":"Additional file 15 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis","year":2022,"lang":"en","type":"dataset","venue":"Figshare","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Université Laval; McGill University; Agriculture and Agri-Food Canada","funders":"","keywords":"DNA methylation; Streptococcus uberis; Biology; Transcriptome; Methylation; Genetics; Computational biology; Subclinical infection; DNA; Streptococcus; Gene; Virology; Gene expression; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001181152,0.001568122,0.001621423,0.001885637,0.0008505499,0.001848983,0.002261931,0.002002328,0.398493],"category_scores_gemma":[0.009319548,0.0006132339,0.001548725,0.003031973,0.0003213707,0.001129063,0.001397277,0.001233679,0.06591369],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001095992,"about_ca_system_score_gemma":0.001763611,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01399687,"about_ca_topic_score_gemma":0.02640813,"domain_scores_codex":[0.9993699,0.00008428869,0.00008949975,0.0002488543,0.0001016584,0.0001058341],"domain_scores_gemma":[0.9962516,0.002321282,0.000326136,0.0003489709,0.0005262185,0.0002257816],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004898204,0.0001021158,0.007569749,0.004310637,0.0002259583,0.0001030493,0.00007029463,0.0008465614,0.0005990403,0.0004861602,0.9805214,0.004675203],"study_design_scores_gemma":[0.005699439,0.0002854906,0.06079421,0.002754202,0.0006237386,0.0004866363,0.0003703511,0.002565172,0.001937238,0.005467631,0.9188409,0.0001749383],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0001052919,0.00001618253,0.00003328848,0.00002263725,0.000006669655,0.000008213132,0.9996507,0.00006429507,0.00009282202],"genre_scores_gemma":[0.001628951,0.00004443565,0.0004790773,0.0001107867,0.00001287619,0.0002069186,0.9966655,0.00008701538,0.0007644709],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.398493,"threshold_uncertainty_score":0.8579767,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05345644779918352,"score_gpt":0.2802264492196319,"score_spread":0.2267700014204483,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}