{"id":"W4394296993","doi":"10.6084/m9.figshare.20479803","title":"Additional file 4 of ProbeTools: designing hybridization probes for targeted genomic sequencing of diverse and hypervariable viral taxa","year":2022,"lang":"en","type":"dataset","venue":"Figshare","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control; Simon Fraser University; University of British Columbia","funders":"","keywords":"Hypervariable region; Biology; Genetics; Computational biology; DNA sequencing; Evolutionary biology; DNA; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002188649,0.002042648,0.002227959,0.004019996,0.001222674,0.003014033,0.003010803,0.002617457,0.5996072],"category_scores_gemma":[0.01765867,0.001012343,0.001626348,0.006846604,0.0005838806,0.002203856,0.001842995,0.001780568,0.1631665],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001485002,"about_ca_system_score_gemma":0.002418016,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01203464,"about_ca_topic_score_gemma":0.02146304,"domain_scores_codex":[0.9988037,0.0002118936,0.0001760927,0.0004294164,0.0001889927,0.0001899538],"domain_scores_gemma":[0.9874364,0.009184413,0.0006975731,0.0009827225,0.001259274,0.0004396332],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001904584,0.00004802879,0.001874519,0.00420714,0.00007907131,0.00004315727,0.00005214898,0.0004954739,0.0001639316,0.0007014007,0.988847,0.003297733],"study_design_scores_gemma":[0.002209696,0.00007289639,0.01065048,0.002019373,0.0002144756,0.0001622169,0.0001948329,0.0007376753,0.0006169569,0.007101364,0.9759252,0.00009480691],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.00003047763,0.00001419563,0.00004696149,0.00002042561,0.00000488554,0.000009252109,0.9995788,0.0001055344,0.0001894948],"genre_scores_gemma":[0.000862846,0.00005896814,0.0007146044,0.0001128646,0.00001153946,0.0002571725,0.9968072,0.0002711655,0.0009036557],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.5996072,"threshold_uncertainty_score":0.5711117,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07265742233425615,"score_gpt":0.2403655041048379,"score_spread":0.1677080817705817,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}