{"id":"W4394356332","doi":"10.6084/m9.figshare.20296404","title":"Additional file 1 of Genotyping-by-Sequencing Based Investigation of Population Structure and Genome Wide Association Studies for Seven Agronomically Important Traits in a Set of 346 Oryza rufipogon Accessions","year":2022,"lang":"en","type":"dataset","venue":"Figshare","topic":"Genetics and Plant Breeding","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Oryza rufipogon; Biology; Genotyping; Genome-wide association study; Genetics; Population; Genome; Evolutionary biology; Oryza sativa; Genotype; Single-nucleotide polymorphism; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001873212,0.00123497,0.001549231,0.002455105,0.0009143958,0.00166044,0.00228582,0.001533036,0.496148],"category_scores_gemma":[0.0106542,0.0007507965,0.0008918793,0.005059242,0.0004036248,0.001234876,0.001435843,0.001300037,0.09528154],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009242694,"about_ca_system_score_gemma":0.001874259,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01083382,"about_ca_topic_score_gemma":0.01900175,"domain_scores_codex":[0.9992195,0.0001415215,0.0001319966,0.0002806418,0.0001114554,0.0001147933],"domain_scores_gemma":[0.9926642,0.004911715,0.000598294,0.0006941477,0.0007778127,0.0003538138],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003146709,0.0001136661,0.005070227,0.003550138,0.0001474573,0.0001115561,0.0001030441,0.0007508349,0.0004656264,0.0009878147,0.9833215,0.00506326],"study_design_scores_gemma":[0.005270349,0.000222311,0.0484407,0.002199912,0.0004641867,0.0004401765,0.0004010824,0.001335493,0.001112194,0.007046929,0.9329306,0.0001360517],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.000100857,0.000009934874,0.00007191818,0.00001435408,0.000003896761,0.00001379485,0.99958,0.00005972066,0.0001454345],"genre_scores_gemma":[0.001467536,0.00003578419,0.0007362096,0.00009250819,0.000007537726,0.0003085404,0.9964011,0.0001325684,0.0008182335],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.496148,"threshold_uncertainty_score":0.7186838,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05578204209106639,"score_gpt":0.2380667837294108,"score_spread":0.1822847416383444,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}