{"id":"W4394361745","doi":"10.6084/m9.figshare.24779274","title":"Additional file 1 of DNA methylation modulated genetic variant effect on gene transcriptional regulation","year":2023,"lang":"en","type":"dataset","venue":"Open MIND","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"DNA methylation; Genetics; Gene; DNA; Epigenetics; Methylation; Biology; Computational biology; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001131263,0.001295471,0.001559343,0.001416304,0.0005973607,0.001823276,0.00183294,0.001488224,0.4046305],"category_scores_gemma":[0.01180877,0.0005128699,0.001153621,0.002946676,0.0003032236,0.0009899957,0.0010125,0.001219259,0.08853371],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009319644,"about_ca_system_score_gemma":0.001522962,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008505563,"about_ca_topic_score_gemma":0.01700158,"domain_scores_codex":[0.9992843,0.0001278778,0.00008158486,0.0002876428,0.0001186252,0.00009992822],"domain_scores_gemma":[0.9940987,0.004431011,0.0003611769,0.0004928384,0.0004123324,0.0002040619],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003066055,0.00006686781,0.005531235,0.003047065,0.0001543572,0.00006985321,0.00003872389,0.0008178577,0.0002019634,0.0006209227,0.9842789,0.004865746],"study_design_scores_gemma":[0.003930605,0.0002252108,0.03963288,0.002167423,0.0005179264,0.000510502,0.0001968029,0.002082682,0.001175161,0.008260625,0.9411978,0.0001024023],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0001090944,0.00002588653,0.00004658025,0.00002389863,0.000004690975,0.000005697247,0.9995717,0.00005528366,0.0001570329],"genre_scores_gemma":[0.00216531,0.00006752139,0.0004884006,0.000127142,0.00001222878,0.0001892041,0.995662,0.0001149693,0.001173137],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.4046305,"threshold_uncertainty_score":0.8492224,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0202250414281389,"score_gpt":0.2776029535437394,"score_spread":0.2573779121156005,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}