{"id":"W4394374351","doi":"10.6084/m9.figshare.14379383","title":"Additional file 2 of PCIP-seq: simultaneous sequencing of integrated viral genomes and their insertion sites with long reads","year":2021,"lang":"en","type":"dataset","venue":"Open MIND","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Computational biology; Biology; DNA sequencing; Genome; RNA-Seq; Genetics; Computer science; DNA; Gene; Transcriptome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001786258,0.001536851,0.00184806,0.002177563,0.001009177,0.002331935,0.002598008,0.002258439,0.368964],"category_scores_gemma":[0.01227891,0.0006672642,0.001362603,0.004001258,0.0004839771,0.001233578,0.001479928,0.001661637,0.07601716],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001206749,"about_ca_system_score_gemma":0.002680166,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009726349,"about_ca_topic_score_gemma":0.01884906,"domain_scores_codex":[0.999059,0.0001446586,0.0001472548,0.0003645465,0.0001286887,0.000155779],"domain_scores_gemma":[0.993917,0.003870259,0.0005100206,0.0005886185,0.000758658,0.0003553235],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000492744,0.0000882393,0.0047744,0.005630013,0.00018714,0.00008557921,0.00005847683,0.0009584677,0.0004963312,0.0007839339,0.981912,0.004532644],"study_design_scores_gemma":[0.004270853,0.00022409,0.02377214,0.002586762,0.0004763397,0.0004384202,0.0002449764,0.00139608,0.001479068,0.007157526,0.9578204,0.0001333242],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.00005894408,0.00001692012,0.00004107895,0.00001907834,0.000005209316,0.00001117897,0.999691,0.00005140734,0.0001051347],"genre_scores_gemma":[0.001168109,0.00004889631,0.000523291,0.0001355772,0.00001122199,0.0002600547,0.9971777,0.00009898459,0.0005762344],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.368964,"threshold_uncertainty_score":0.9000962,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01608063382329489,"score_gpt":0.2384606040735091,"score_spread":0.2223799702502142,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}