{"id":"W4394380543","doi":"10.6084/m9.figshare.14177090","title":"Additional file 4 of Genome-wide association analysis identified both RNA-seq and DNA variants associated to paratuberculosis in Canadian Holstein cattle ‘in vitro’ experimentally infected macrophages","year":2021,"lang":"en","type":"dataset","venue":"Figshare","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Paratuberculosis; Biology; RNA-Seq; Genome; Genetics; Genome-wide association study; DNA; Computational biology; Transcriptome; Single-nucleotide polymorphism; Genotype; Gene; Gene expression; Bacteria; Mycobacterium","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001344958,0.00154467,0.001911815,0.002230577,0.001643542,0.002413435,0.002996887,0.002311998,0.4701117],"category_scores_gemma":[0.01262499,0.000739727,0.001653518,0.004194354,0.0005414622,0.0009268148,0.001284907,0.001415088,0.05789548],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002484045,"about_ca_system_score_gemma":0.004684917,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.135211,"about_ca_topic_score_gemma":0.2179054,"domain_scores_codex":[0.9992858,0.00008760641,0.00007605934,0.0002571685,0.0001232636,0.0001702368],"domain_scores_gemma":[0.9929201,0.004259032,0.000438121,0.0006813181,0.001232944,0.0004685805],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004273389,0.00005145872,0.005723657,0.003663164,0.000195261,0.00007485872,0.00007362831,0.0005997608,0.0003109529,0.0006064936,0.9849083,0.003365209],"study_design_scores_gemma":[0.005990191,0.0001685133,0.0672815,0.003139239,0.0008703658,0.000450933,0.0003158407,0.001507259,0.0009541402,0.005897308,0.9132459,0.0001789106],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0000725417,0.00001766129,0.00002724642,0.00002538421,0.000006465177,0.000009722158,0.99968,0.00004299241,0.0001178215],"genre_scores_gemma":[0.002280706,0.00007556854,0.0005618933,0.0001805395,0.00002065726,0.0003039343,0.9948924,0.0001316491,0.001552617],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.864789,"threshold_uncertainty_score":0.7558213,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01597977329124742,"score_gpt":0.2728740515660323,"score_spread":0.2568942782747848,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}