{"id":"W4394395902","doi":"10.6084/m9.figshare.22757286","title":"Additional file 3 of Genome-wide assessment and mapping of inbreeding depression identifies candidate genes associated with semen traits in Holstein bulls","year":2023,"lang":"en","type":"dataset","venue":"Figshare","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Inbreeding depression; Genetics; Gene; Candidate gene; Semen; Quantitative trait locus; Inbreeding; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001159457,0.001303036,0.00170585,0.001989988,0.0009093843,0.001832336,0.002238755,0.001759989,0.470306],"category_scores_gemma":[0.0110072,0.0005574134,0.001407052,0.00331712,0.0003255311,0.0009201554,0.001195798,0.001063669,0.0724788],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008873331,"about_ca_system_score_gemma":0.001465151,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01625577,"about_ca_topic_score_gemma":0.02716728,"domain_scores_codex":[0.9994009,0.00008752514,0.00009080887,0.0002262448,0.00009731199,0.00009726197],"domain_scores_gemma":[0.9938204,0.004353745,0.0004727385,0.0004340538,0.0006448026,0.0002742519],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003960815,0.00008540852,0.009124585,0.004742141,0.0002366925,0.0001496264,0.00009660119,0.0007461234,0.0004049691,0.000728957,0.9780844,0.005204238],"study_design_scores_gemma":[0.005692824,0.0002307812,0.07761646,0.003183924,0.0007840236,0.0007142375,0.0003763565,0.001855454,0.001193625,0.006888721,0.9012908,0.0001727048],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0001097754,0.0000187567,0.00004580422,0.00002303622,0.000004544813,0.000009224083,0.9995988,0.00005204339,0.0001380956],"genre_scores_gemma":[0.002145132,0.00006439608,0.0005217193,0.0001282804,0.00001317159,0.000279901,0.9955769,0.00009682941,0.001173712],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.470306,"threshold_uncertainty_score":0.7555441,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02042118349855174,"score_gpt":0.2481539575641102,"score_spread":0.2277327740655585,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}