{"id":"W4394401849","doi":"10.6084/m9.figshare.14177096","title":"Additional file 6 of Genome-wide association analysis identified both RNA-seq and DNA variants associated to paratuberculosis in Canadian Holstein cattle ‘in vitro’ experimentally infected macrophages","year":2021,"lang":"en","type":"dataset","venue":"Figshare","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Paratuberculosis; Biology; RNA-Seq; Genome; DNA; Genetics; In vitro; RNA; Computational biology; Microbiology; Transcriptome; Gene; Bacteria; Gene expression","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001389451,0.001581721,0.001975623,0.002220051,0.001666198,0.00248942,0.003005992,0.002376344,0.4578888],"category_scores_gemma":[0.01274911,0.000774593,0.001707837,0.004244525,0.0005441295,0.0009242486,0.00130349,0.00146525,0.05942108],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002473698,"about_ca_system_score_gemma":0.004831178,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1398022,"about_ca_topic_score_gemma":0.2288893,"domain_scores_codex":[0.9992481,0.00009322225,0.00008269217,0.0002675049,0.0001324823,0.0001760364],"domain_scores_gemma":[0.9927596,0.004245203,0.0004505632,0.000735687,0.001316444,0.0004924675],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004041185,0.00004927739,0.005283582,0.00357024,0.0001942159,0.00007269985,0.00007134737,0.0005604987,0.0003068892,0.0005677632,0.9857421,0.003177332],"study_design_scores_gemma":[0.005799694,0.000153926,0.06502076,0.003056221,0.0008260683,0.0004148388,0.0003025794,0.001371642,0.0009107191,0.005559702,0.9164063,0.000177431],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0000675123,0.0000174815,0.00002609417,0.00002559677,0.000006675227,0.000009337854,0.9996856,0.00004370161,0.0001179572],"genre_scores_gemma":[0.002089417,0.00007289921,0.00055473,0.0001745534,0.00001996511,0.0002856412,0.9951835,0.0001326716,0.001486575],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.8601978,"threshold_uncertainty_score":0.7732559,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01587293400767712,"score_gpt":0.2726120006338565,"score_spread":0.2567390666261793,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}