{"id":"W4394434022","doi":"10.6084/m9.figshare.22620832","title":"Additional file 1 of Complete sequence verification of plasmid DNA using the Oxford Nanopore Technologies’ MinION device","year":2023,"lang":"en","type":"dataset","venue":"Figshare","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"","keywords":"Minion; Nanopore sequencing; Plasmid; Nanopore; Computer science; Sequence (biology); DNA; Computational biology; DNA sequencing; Biology; Programming language; Genetics; Nanotechnology; Materials science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002846256,0.001665677,0.002091852,0.003495832,0.001185916,0.002546737,0.002871257,0.002156709,0.5859898],"category_scores_gemma":[0.01842036,0.0008975485,0.001193067,0.00619083,0.0005920234,0.002024656,0.001626381,0.001749732,0.1886173],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00164403,"about_ca_system_score_gemma":0.003444354,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01024649,"about_ca_topic_score_gemma":0.01881664,"domain_scores_codex":[0.9984258,0.0002858472,0.0002404952,0.0005504961,0.0002709471,0.0002263995],"domain_scores_gemma":[0.986213,0.009105316,0.0009387754,0.001316961,0.001860536,0.0005654873],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000224292,0.0000545393,0.001596668,0.003547177,0.00006772202,0.00003928625,0.00003730475,0.0003759315,0.0001814211,0.0006535189,0.9899802,0.003242013],"study_design_scores_gemma":[0.002130054,0.0001190068,0.01132253,0.001938305,0.0001839065,0.0001765304,0.0001657778,0.0005299202,0.0008166192,0.005908681,0.9766317,0.00007692604],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.00002798702,0.000009771526,0.00004182005,0.00001597328,0.000003637024,0.00000815805,0.9996946,0.0000550603,0.0001429589],"genre_scores_gemma":[0.00056647,0.00003898409,0.0005023434,0.00008444174,0.000007706275,0.000218901,0.9976284,0.0001449333,0.0008078828],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.5859898,"threshold_uncertainty_score":0.5905353,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07196405350142449,"score_gpt":0.3065754477975416,"score_spread":0.2346113942961171,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}