{"id":"W4394458984","doi":"10.6084/m9.figshare.23583544","title":"Additional file 4 of An open protocol for modeling T Cell Clonotype repertoires using TCRβ CDR3 sequences","year":2023,"lang":"en","type":"dataset","venue":"Open MIND","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université du Québec","funders":"","keywords":"T-cell receptor; Biology; Computer science; T cell; Computational biology; Genetics; Immune system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00181618,0.001745783,0.001757486,0.002405713,0.0007437638,0.002247886,0.002421108,0.002016538,0.4925892],"category_scores_gemma":[0.01437234,0.0008322206,0.00152159,0.003329897,0.0003807712,0.001370961,0.001391785,0.001672908,0.1390049],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001240153,"about_ca_system_score_gemma":0.002143081,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01005702,"about_ca_topic_score_gemma":0.02093216,"domain_scores_codex":[0.9991302,0.0001644629,0.000125307,0.0003038882,0.0001465323,0.0001296361],"domain_scores_gemma":[0.993084,0.005007975,0.0003390113,0.0006183502,0.0006735587,0.0002770063],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001933678,0.00005217977,0.002020612,0.00283055,0.00008538589,0.00004247181,0.00003528795,0.0006745655,0.0001489693,0.0006130431,0.9895234,0.00378013],"study_design_scores_gemma":[0.001791029,0.00006627315,0.007290064,0.001291061,0.0001897835,0.0002029831,0.0001118342,0.001426594,0.0006433526,0.007201491,0.9797145,0.00007094012],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.00005250085,0.00001963041,0.00009354737,0.00002324737,0.00000701695,0.00001222171,0.9993765,0.000197916,0.0002174693],"genre_scores_gemma":[0.001172726,0.0000660162,0.00102435,0.0001280304,0.00001309175,0.0003171801,0.9957975,0.0003124408,0.001168688],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.4925892,"threshold_uncertainty_score":0.7237599,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1109180474699287,"score_gpt":0.3710708362676982,"score_spread":0.2601527887977694,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}