{"id":"W4394474794","doi":"10.6084/m9.figshare.14379389","title":"Additional file 4 of PCIP-seq: simultaneous sequencing of integrated viral genomes and their insertion sites with long reads","year":2021,"lang":"en","type":"dataset","venue":"Figshare","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Computational biology; Genome; Biology; DNA sequencing; Computer science; Genetics; DNA; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00204753,0.002303516,0.002493615,0.002900952,0.001324384,0.002805735,0.003510539,0.002807598,0.3849295],"category_scores_gemma":[0.0109391,0.0009591531,0.001691408,0.005421719,0.0006029952,0.001742977,0.00178978,0.002094987,0.1279532],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001540704,"about_ca_system_score_gemma":0.002976549,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01094107,"about_ca_topic_score_gemma":0.02086768,"domain_scores_codex":[0.9987836,0.0001937661,0.0001569933,0.0004955786,0.0001823951,0.0001875969],"domain_scores_gemma":[0.9946901,0.003260982,0.0003930182,0.0005878683,0.0007666919,0.0003013812],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003403752,0.00008522625,0.003045799,0.006768081,0.0001843035,0.00006008242,0.00006382415,0.001151831,0.0006034353,0.0008839591,0.9827724,0.004040741],"study_design_scores_gemma":[0.002129357,0.0001175249,0.01163308,0.001728851,0.0003051364,0.0001762197,0.0001583268,0.001043763,0.00138139,0.005757861,0.9754561,0.0001124237],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.00003903245,0.00001799211,0.0000473639,0.00001422224,0.000005362702,0.000009482478,0.9996682,0.00009050182,0.0001079616],"genre_scores_gemma":[0.0006167883,0.00004261062,0.0005192431,0.00008221976,0.000006501983,0.0002096468,0.9978735,0.0001413487,0.0005081043],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.3849295,"threshold_uncertainty_score":0.8773234,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0146913693175495,"score_gpt":0.2091770686004607,"score_spread":0.1944856992829112,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}