{"id":"W4394475590","doi":"10.6084/m9.figshare.20296407","title":"Additional file 2 of Genotyping-by-Sequencing Based Investigation of Population Structure and Genome Wide Association Studies for Seven Agronomically Important Traits in a Set of 346 Oryza rufipogon Accessions","year":2022,"lang":"en","type":"dataset","venue":"Figshare","topic":"Genetics and Plant Breeding","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Oryza rufipogon; Biology; Genotyping; Genetics; Genome-wide association study; Genome; Population; Computational biology; Evolutionary biology; Oryza sativa; Genotype; Single-nucleotide polymorphism; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001962757,0.001364896,0.001712208,0.002624894,0.000906257,0.001793806,0.002449099,0.001735528,0.5189194],"category_scores_gemma":[0.0103889,0.0007685228,0.0009746681,0.005286131,0.0004446589,0.001368618,0.00147836,0.001352048,0.1035523],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009603584,"about_ca_system_score_gemma":0.001807262,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01010815,"about_ca_topic_score_gemma":0.01701892,"domain_scores_codex":[0.9991497,0.0001348375,0.0001486096,0.0003105405,0.0001280672,0.000128223],"domain_scores_gemma":[0.9920077,0.005201261,0.000673238,0.0007814465,0.000942688,0.0003935103],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003481492,0.0001156967,0.0045565,0.003581735,0.0001376202,0.0001117787,0.00009851674,0.0007469417,0.000534028,0.0009546708,0.9840409,0.004773472],"study_design_scores_gemma":[0.005453458,0.0002154674,0.04166775,0.002020918,0.000401945,0.0003960102,0.0003773714,0.001406601,0.001219662,0.007304026,0.9393948,0.0001419311],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.00009319526,0.000008713324,0.00007096267,0.00001549453,0.000004352748,0.00001327072,0.9995677,0.00007670077,0.0001496426],"genre_scores_gemma":[0.001353141,0.00002862012,0.0007274948,0.00008996418,0.000008632399,0.0002652036,0.9965578,0.0001555566,0.0008135415],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.5189194,"threshold_uncertainty_score":0.6862031,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05410302464530591,"score_gpt":0.2376110680497155,"score_spread":0.1835080434044096,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}