{"id":"W4394489800","doi":"10.6084/m9.figshare.21510523","title":"Additional file 16 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis","year":2022,"lang":"en","type":"dataset","venue":"Figshare","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Université Laval; McGill University; Agriculture and Agri-Food Canada","funders":"","keywords":"Streptococcus uberis; DNA methylation; Transcriptome; Biology; Methylation; Subclinical infection; Computational biology; Genetics; Microbiology; Streptococcus; DNA; Gene; Bacteria; Virology; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001159139,0.001607913,0.001601858,0.001923251,0.0008121801,0.001866612,0.002124306,0.001951542,0.3841365],"category_scores_gemma":[0.008999116,0.0005713315,0.001540374,0.003025695,0.0003111725,0.001056964,0.001394534,0.001194418,0.06905482],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001085579,"about_ca_system_score_gemma":0.001802036,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0129707,"about_ca_topic_score_gemma":0.02622446,"domain_scores_codex":[0.9993398,0.00008750043,0.00009197483,0.0002574727,0.0001151943,0.000108102],"domain_scores_gemma":[0.9963022,0.002266526,0.0003106713,0.0003463851,0.0005593512,0.0002147203],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004826753,0.00009345725,0.007364335,0.004624366,0.0002290486,0.0001021087,0.00007226488,0.0008248447,0.000675917,0.0004442288,0.980248,0.004838747],"study_design_scores_gemma":[0.004439025,0.0002410814,0.05530719,0.002655519,0.0006198267,0.0004520199,0.000345938,0.002389821,0.00199966,0.005222679,0.9261681,0.0001591117],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.00009519514,0.00001766191,0.00003632753,0.00002220731,0.000006571014,0.000007492134,0.9996405,0.00007290641,0.0001011487],"genre_scores_gemma":[0.001473759,0.00004587948,0.0004874514,0.0001020115,0.00001150516,0.0001797478,0.9968957,0.00009371247,0.0007102087],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.3841365,"threshold_uncertainty_score":0.8784546,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05294537980799881,"score_gpt":0.2799006396286032,"score_spread":0.2269552598206044,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}