{"id":"W4394543982","doi":"10.6084/m9.figshare.20296410","title":"Additional file 3 of Genotyping-by-Sequencing Based Investigation of Population Structure and Genome Wide Association Studies for Seven Agronomically Important Traits in a Set of 346 Oryza rufipogon Accessions","year":2022,"lang":"en","type":"dataset","venue":"Figshare","topic":"Genetics and Plant Breeding","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Oryza rufipogon; Biology; Genotyping; Genome-wide association study; Genome; Population; Genetics; Evolutionary biology; Oryza sativa; Genotype; Single-nucleotide polymorphism; Gene; Demography","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001926807,0.001506127,0.00184609,0.002959336,0.001029885,0.001889453,0.002701825,0.001748933,0.5663403],"category_scores_gemma":[0.0109863,0.0008082453,0.001064019,0.00591455,0.0004852079,0.001404217,0.001617341,0.001426935,0.1152246],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001005124,"about_ca_system_score_gemma":0.001904921,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0111373,"about_ca_topic_score_gemma":0.01973685,"domain_scores_codex":[0.999118,0.0001443344,0.0001493086,0.0003154238,0.0001368463,0.0001359745],"domain_scores_gemma":[0.9912811,0.005792475,0.0006573036,0.0008166798,0.001035301,0.0004172831],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003029087,0.00009671772,0.00370973,0.003223951,0.0001295792,0.0001024939,0.00009654041,0.0007798196,0.0004815627,0.0009123837,0.9856251,0.004539265],"study_design_scores_gemma":[0.005229664,0.0001931759,0.03612051,0.00180084,0.0003842209,0.0003739809,0.0003604854,0.001390775,0.001256054,0.00806306,0.9446842,0.0001429697],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.00007846313,0.000007950983,0.00008180847,0.00001459524,0.000004577074,0.00001332585,0.9995331,0.00009869067,0.0001675731],"genre_scores_gemma":[0.0012903,0.00002771036,0.0007518354,0.00008490227,0.000008748128,0.0002549507,0.9965447,0.0002058526,0.0008310277],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.5663403,"threshold_uncertainty_score":0.6185629,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05489406187681808,"score_gpt":0.2377464418186961,"score_spread":0.182852379941878,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}