{"id":"W4394549047","doi":"10.6084/m9.figshare.21510547","title":"Additional file 6 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis","year":2022,"lang":"en","type":"dataset","venue":"Figshare","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Université Laval; McGill University; Agriculture and Agri-Food Canada","funders":"","keywords":"DNA methylation; Streptococcus uberis; Transcriptome; Biology; Methylation; Computational biology; Genetics; Bisulfite sequencing; DNA; Streptococcus; Bioinformatics; Gene; Bacteria; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001276285,0.001574048,0.00154361,0.002059948,0.0008245655,0.001866042,0.002045624,0.001901219,0.3688055],"category_scores_gemma":[0.008718153,0.0005730726,0.00155653,0.002921684,0.0003320242,0.001064562,0.001423808,0.001217191,0.06786145],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001045427,"about_ca_system_score_gemma":0.001793908,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01116514,"about_ca_topic_score_gemma":0.02284114,"domain_scores_codex":[0.999279,0.00009732693,0.0001023353,0.0002813843,0.0001229884,0.0001171066],"domain_scores_gemma":[0.9960327,0.002456723,0.0003443973,0.00037332,0.0005783875,0.0002144913],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005192097,0.0001179346,0.009677952,0.005789709,0.0002646093,0.0001146962,0.00008834274,0.00114137,0.000943496,0.0005800212,0.9746661,0.006096559],"study_design_scores_gemma":[0.003448682,0.0002311807,0.05225399,0.002221253,0.000519707,0.0004012386,0.0003077386,0.002267563,0.002162343,0.004575673,0.9314592,0.0001514007],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0001032468,0.00001652403,0.0000426505,0.00001865592,0.000005912342,0.00000866139,0.99963,0.00007842997,0.0000959564],"genre_scores_gemma":[0.001482338,0.00004479126,0.0006189125,0.0000920672,0.00001000027,0.000202171,0.9967664,0.0001074018,0.0006758391],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.3688055,"threshold_uncertainty_score":0.9003223,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0523178634570749,"score_gpt":0.2780071767722982,"score_spread":0.2256893133152233,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}